RetrogeneDB - Parental gene ENSCPOG00000019337 details

                            
>ENSCPOG00000019337
CCTGTGAAAATGGTTCGCTACTCTCTTGACCCAGAAAACCCCACAAAATCATGCAAATCCAGAGGCTCAAATCTTCGGGT

TCACTTTAAGAACACCCGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCGCAAGGCCACCAAGTATCTGAAGGATG

TCACGTTAAAGAAGCAATGTGTGCCATTCCGGCGTTACAATGGTGGAGTTGGAAGATGTGCCCAGGCCAAACAATGGGGC

TGGACCCAGGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACT

TAAGGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGCGCCGCCGTACTTACA

GAGCTCATGGCCGTATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAGGAACAGATTGTG

CCTAAACCAGAGGAGGAAGTTGCACAGAAGAAAAAAATATCTCAGAAGAAACTGAAGAAACAAAAACTTATGGCACGGGA

ATAA

Library	Parental gene expression (RPM)
SRP017611_brain	100 .83 RPM
SRP017611_kidney	156 .51 RPM
SRP017611_liver	112 .95 RPM
SRP040447_lung	221 .34 RPM
SRP040447_skeletal_muscle	227 .83 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Choloepus hoffmanni	ENSCHOG00000007872	possible_ortholog	50 retrogenes	retro_chof_1020, retro_chof_1021, retro_chof_107, retro_chof_1232, retro_chof_130, retro_chof_137, retro_chof_1405, retro_chof_1432, retro_chof_1448, retro_chof_1453, retro_chof_1471, retro_chof_1475, retro_chof_153, retro_chof_1634, retro_chof_1671, retro_chof_1678, retro_chof_1754, retro_chof_1786, retro_chof_187, retro_chof_1871, retro_chof_1895, retro_chof_1901, retro_chof_1908, retro_chof_2038, retro_chof_204, retro_chof_2133, retro_chof_2140, retro_chof_221, retro_chof_2243, retro_chof_2415, retro_chof_2458, retro_chof_246, retro_chof_2489, retro_chof_2534, retro_chof_2570, retro_chof_2610, retro_chof_2640, retro_chof_463, retro_chof_507, retro_chof_564, retro_chof_65, retro_chof_690, retro_chof_716, retro_chof_759, retro_chof_775, retro_chof_798, retro_chof_875, retro_chof_899, retro_chof_945, retro_chof_953,
Equus caballus	ENSECAG00000011547	ortholog_one2one	9 retrogenes	retro_ecab_162, retro_ecab_331, retro_ecab_488, retro_ecab_584, retro_ecab_620, retro_ecab_678, retro_ecab_751, retro_ecab_939, retro_ecab_977,
Echinops telfairi	ENSETEG00000011322	possible_ortholog	10 retrogenes	retro_etel_1787, retro_etel_1810, retro_etel_1900, retro_etel_1936, retro_etel_1954, retro_etel_207, retro_etel_396, retro_etel_470, retro_etel_565, retro_etel_831,
Homo sapiens	ENSG00000215472	possible_ortholog	1 retrogene	retro_hsap_2367,
Latimeria chalumnae	ENSLACG00000008835	ortholog_one2many	1 retrogene	retro_lcha_38,
Macropus eugenii	ENSMEUG00000016709	possible_ortholog	26 retrogenes	retro_meug_1111, retro_meug_127, retro_meug_1285, retro_meug_1485, retro_meug_1821, retro_meug_188, retro_meug_1886, retro_meug_191, retro_meug_204, retro_meug_2159, retro_meug_2167, retro_meug_2183, retro_meug_257, retro_meug_326, retro_meug_355, retro_meug_373, retro_meug_410, retro_meug_413, retro_meug_509, retro_meug_58, retro_meug_703, retro_meug_738, retro_meug_740, retro_meug_779, retro_meug_81, retro_meug_934,
Microcebus murinus	ENSMICG00000017102	possible_ortholog	14 retrogenes	retro_mmur_1046, retro_mmur_1047, retro_mmur_107, retro_mmur_1305, retro_mmur_1360, retro_mmur_1614, retro_mmur_195, retro_mmur_325, retro_mmur_335, retro_mmur_427, retro_mmur_484, retro_mmur_754, retro_mmur_817, retro_mmur_855,
Myotis lucifugus	ENSMLUG00000025554	possible_ortholog	22 retrogenes	retro_mluc_1141, retro_mluc_1224, retro_mluc_1300, retro_mluc_1375, retro_mluc_1468, retro_mluc_1500, retro_mluc_1547, retro_mluc_1579, retro_mluc_1739, retro_mluc_1755, retro_mluc_1822, retro_mluc_1870, retro_mluc_1959, retro_mluc_2018, retro_mluc_2027, retro_mluc_2036, retro_mluc_2059, retro_mluc_2165, retro_mluc_2198, retro_mluc_719, retro_mluc_835, retro_mluc_929,
Myotis lucifugus	ENSMLUG00000029264	possible_ortholog	36 retrogenes	retro_mluc_1043, retro_mluc_1060, retro_mluc_1061, retro_mluc_1081, retro_mluc_1094, retro_mluc_1163, retro_mluc_1193, retro_mluc_1206, retro_mluc_123, retro_mluc_1230, retro_mluc_1241, retro_mluc_1416, retro_mluc_157, retro_mluc_1581, retro_mluc_1652, retro_mluc_1677, retro_mluc_1693, retro_mluc_170, retro_mluc_1711, retro_mluc_1848, retro_mluc_1890, retro_mluc_2003, retro_mluc_2064, retro_mluc_2095, retro_mluc_2125, retro_mluc_2387, retro_mluc_2636, retro_mluc_2637, retro_mluc_661, retro_mluc_734, retro_mluc_763, retro_mluc_779, retro_mluc_785, retro_mluc_807, retro_mluc_938, retro_mluc_977,
Macaca mulatta	ENSMMUG00000018837	possible_ortholog	26 retrogenes	retro_mmul_1015, retro_mmul_1046, retro_mmul_1205, retro_mmul_1216, retro_mmul_1225, retro_mmul_1441, retro_mmul_163, retro_mmul_172, retro_mmul_1784, retro_mmul_1858, retro_mmul_1952, retro_mmul_2006, retro_mmul_2008, retro_mmul_2257, retro_mmul_2268, retro_mmul_2284, retro_mmul_2304, retro_mmul_2512, retro_mmul_46, retro_mmul_474, retro_mmul_589, retro_mmul_652, retro_mmul_669, retro_mmul_825, retro_mmul_956, retro_mmul_971,
Mus musculus	ENSMUSG00000062328	ortholog_one2one	80 retrogenes	retro_mmus_1002, retro_mmus_1004, retro_mmus_1011, retro_mmus_1024, retro_mmus_1032, retro_mmus_1040, retro_mmus_1042, retro_mmus_1087, retro_mmus_1138, retro_mmus_1205, retro_mmus_1208, retro_mmus_1218, retro_mmus_1222, retro_mmus_1226, retro_mmus_1259, retro_mmus_1263, retro_mmus_1308, retro_mmus_1346, retro_mmus_1395, retro_mmus_1404, retro_mmus_1484, retro_mmus_1499, retro_mmus_1502, retro_mmus_1710, retro_mmus_1840, retro_mmus_1842, retro_mmus_1935, retro_mmus_201, retro_mmus_2016, retro_mmus_2034, retro_mmus_2076, retro_mmus_2099, retro_mmus_2124, retro_mmus_2156, retro_mmus_2203, retro_mmus_2261, retro_mmus_2262, retro_mmus_2343, retro_mmus_2345, retro_mmus_243, retro_mmus_2468, retro_mmus_2550, retro_mmus_2613, retro_mmus_2634, retro_mmus_2724, retro_mmus_2759, retro_mmus_2773, retro_mmus_2775, retro_mmus_288, retro_mmus_2919, retro_mmus_3003, retro_mmus_302, retro_mmus_3037, retro_mmus_3049, retro_mmus_310, retro_mmus_311, retro_mmus_314, retro_mmus_327, retro_mmus_334, retro_mmus_3354, retro_mmus_337, retro_mmus_3490, retro_mmus_3601, retro_mmus_3687, retro_mmus_388, retro_mmus_419, retro_mmus_420, retro_mmus_523, retro_mmus_525, retro_mmus_529, retro_mmus_661, retro_mmus_673, retro_mmus_741, retro_mmus_773, retro_mmus_828, retro_mmus_871, retro_mmus_879, retro_mmus_922, retro_mmus_948, retro_mmus_966,
Oryctolagus cuniculus	ENSOCUG00000012485	possible_ortholog	2 retrogenes	retro_ocun_1433, retro_ocun_231,
Procavia capensis	ENSPCAG00000003103	possible_ortholog	8 retrogenes	retro_pcap_193, retro_pcap_196, retro_pcap_197, retro_pcap_200, retro_pcap_206, retro_pcap_250, retro_pcap_363, retro_pcap_52,
Pongo abelii	ENSPPYG00000009151	possible_ortholog	43 retrogenes	retro_pabe_1177, retro_pabe_1178, retro_pabe_1179, retro_pabe_1197, retro_pabe_1373, retro_pabe_1408, retro_pabe_1448, retro_pabe_1464, retro_pabe_1531, retro_pabe_1565, retro_pabe_1574, retro_pabe_1725, retro_pabe_1807, retro_pabe_1832, retro_pabe_1902, retro_pabe_2052, retro_pabe_2053, retro_pabe_2088, retro_pabe_2102, retro_pabe_2164, retro_pabe_2231, retro_pabe_2317, retro_pabe_2520, retro_pabe_2635, retro_pabe_2638, retro_pabe_2871, retro_pabe_2917, retro_pabe_2921, retro_pabe_2971, retro_pabe_3020, retro_pabe_3029, retro_pabe_3103, retro_pabe_3187, retro_pabe_3248, retro_pabe_3253, retro_pabe_3262, retro_pabe_3277, retro_pabe_347, retro_pabe_3493, retro_pabe_539, retro_pabe_567, retro_pabe_617, retro_pabe_882,
Pteropus vampyrus	ENSPVAG00000001969	possible_ortholog	76 retrogenes	retro_pvam_1003, retro_pvam_1005, retro_pvam_1020, retro_pvam_1036, retro_pvam_1037, retro_pvam_104, retro_pvam_1042, retro_pvam_1085, retro_pvam_1093, retro_pvam_1105, retro_pvam_1155, retro_pvam_1162, retro_pvam_1186, retro_pvam_1194, retro_pvam_1204, retro_pvam_1218, retro_pvam_1279, retro_pvam_1336, retro_pvam_1338, retro_pvam_1351, retro_pvam_1366, retro_pvam_1372, retro_pvam_138, retro_pvam_1392, retro_pvam_1397, retro_pvam_1407, retro_pvam_1409, retro_pvam_142, retro_pvam_143, retro_pvam_1452, retro_pvam_1454, retro_pvam_182, retro_pvam_206, retro_pvam_220, retro_pvam_263, retro_pvam_268, retro_pvam_278, retro_pvam_292, retro_pvam_309, retro_pvam_339, retro_pvam_348, retro_pvam_395, retro_pvam_40, retro_pvam_402, retro_pvam_417, retro_pvam_424, retro_pvam_439, retro_pvam_442, retro_pvam_455, retro_pvam_464, retro_pvam_497, retro_pvam_520, retro_pvam_55, retro_pvam_571, retro_pvam_577, retro_pvam_584, retro_pvam_588, retro_pvam_596, retro_pvam_604, retro_pvam_608, retro_pvam_654, retro_pvam_659, retro_pvam_684, retro_pvam_700, retro_pvam_701, retro_pvam_705, retro_pvam_712, retro_pvam_716, retro_pvam_726, retro_pvam_751, retro_pvam_756, retro_pvam_777, retro_pvam_862, retro_pvam_88, retro_pvam_925, retro_pvam_966,
Sarcophilus harrisii	ENSSHAG00000003060	possible_ortholog	14 retrogenes	retro_shar_206, retro_shar_214, retro_shar_279, retro_shar_387, retro_shar_457, retro_shar_586, retro_shar_593, retro_shar_606, retro_shar_713, retro_shar_743, retro_shar_751, retro_shar_800, retro_shar_802, retro_shar_817,
Tarsius syrichta	ENSTSYG00000007402	possible_ortholog	20 retrogenes	retro_tsyr_1042, retro_tsyr_1298, retro_tsyr_1349, retro_tsyr_1416, retro_tsyr_1555, retro_tsyr_159, retro_tsyr_180, retro_tsyr_1801, retro_tsyr_1940, retro_tsyr_2021, retro_tsyr_2053, retro_tsyr_2088, retro_tsyr_253, retro_tsyr_304, retro_tsyr_693, retro_tsyr_752, retro_tsyr_77, retro_tsyr_819, retro_tsyr_860, retro_tsyr_868,
Tursiops truncatus	ENSTTRG00000005797	possible_ortholog	31 retrogenes	retro_ttru_1153, retro_ttru_1338, retro_ttru_1374, retro_ttru_1436, retro_ttru_1509, retro_ttru_1716, retro_ttru_1757, retro_ttru_178, retro_ttru_1784, retro_ttru_1811, retro_ttru_1854, retro_ttru_1856, retro_ttru_193, retro_ttru_1932, retro_ttru_232, retro_ttru_264, retro_ttru_299, retro_ttru_447, retro_ttru_49, retro_ttru_568, retro_ttru_609, retro_ttru_627, retro_ttru_636, retro_ttru_660, retro_ttru_691, retro_ttru_703, retro_ttru_747, retro_ttru_800, retro_ttru_836, retro_ttru_884, retro_ttru_992,
Vicugna pacos	ENSVPAG00000009568	possible_ortholog	1 retrogene	retro_vpac_10,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_50	100.00	75.94	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_159	50.83	61.50	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_213	77.78	77.01	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_238	89.42	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_272	57.81	67.38	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cpor_319	80.75	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cpor_374	73.24	73.80	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cpor_521	83.55	80.75	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cpor_662	68.70	60.96	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cpor_675	68.21	91.44	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cpor_776	67.89	57.75	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cpor_784	76.72	99.47	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cpor_792	76.32	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cpor_827	71.43	98.93	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cpor_872	56.86	53.48	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cpor_924	61.86	50.80	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_cpor_943	65.22	96.79	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_cpor_955	72.68	95.72	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_cpor_1004	66.19	72.19	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_cpor_1005	69.06	72.19	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_cpor_1015	61.47	57.22	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_cpor_1050	50.51	51.34	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_cpor_1083	66.36	57.75	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_cpor_1118	79.13	61.50	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_cpor_1125	82.49	93.58	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_cpor_1227	56.88	58.29	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_cpor_1271	63.19	83.42	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_cpor_1305	77.12	62.03	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_cpor_1413	61.29	65.78	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_cpor_1455	68.14	59.36	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_cpor_1539	76.42	65.24	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000019337 retrocopies

Parental gene:	ENSCPOG00000019337
Aliases:	None
Description:	None
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_14:16066790..16069771(+)

Parental gene:

ENSCPOG00000019337