Parental gene:

ENSOCUG00000012485

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:9:90425915..90429075(-)


>ENSOCUG00000012485
CCTGCGAAAATGGTTCGCTACTCACTGGACCCAGAAAACCCCACAAAATCATGCAAATCAAGAGGCTCGAATCTTCGGGT
TCACTTTAAGAACACTCGAGAAACTGCCCAGGCCATCAAGGGTATGCATATCCGAAAAGCCACCAAATACCTGAAAGACG
TCACGTTAAAGAAGCAGTGTGTGCCATTCCGTCGGTACAATGGTGGAGTTGGTAGATGTGCCCAGGCCAAGCAGTGGGGT
TGGACCCAGGGTCGTTGGCCCAAAAAAAGTGCCGAGTTTCTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAGCT
GAAGGGTTTGGATGTAGATTCTTTGGTCATTGAGCACATCCAGGTGAACAAGGCCCCCAAGATGCGCCGTCGGACCTACA
GAGCCCACGGCCGGATCAACCCGTACATGAGCTCCCCGTGCCACATCGAGATGATCCTCACTGAGAAGGAACAGATAGTT
CCTAAGCCAGAAGAGGAGGTGGCACAAAAGAAAAAGATATCCCAGAAGAAACTAAAGAAGCAAAAGCTTATGGCTCGGGA
ATAA

Library Parental gene expression (RPM)
SRP017611_liver 48 .56 RPM
SRP017611_kidney 230 .28 RPM
SRP017611_brain 108 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000022902 ortholog_one2many 5 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 possible_ortholog 50 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Equus caballus ENSECAG00000011547 possible_ortholog 9 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2many 1 retrogene
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Microcebus murinus ENSMICG00000017102 possible_ortholog 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 ortholog_many2many 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 ortholog_many2many 36 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Monodelphis domestica ENSMODG00000003534 ortholog_one2many 11 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Procavia capensis ENSPCAG00000003103 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Pteropus vampyrus ENSPVAG00000001969 possible_ortholog 76 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000005193 ortholog_one2one 33 retrogenes
Tarsius syrichta ENSTSYG00000007402 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 possible_ortholog 31 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_231 100.00 98.40
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2. retro_ocun_1433 58.45 75.40
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Download FASTA sequences of all ENSOCUG00000012485 retrocopies