RetrogeneDB ID: | retro_acar_22 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL344177.1:49645..51184(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000023181 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000026996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.79 % |
Parental protein coverage: | 84.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKPYNCLECGQSFADSSGLRSHQRTHTGEKPYNCLECGQSFAHSSGLRSHQRTHTGEKPYKCLECEQTFA |
EKPYNCLECGQSFADSSGLRSHQRTHTGEKPYNCLECGQSFAHSSGLRSHQRTHTGEKPYKCLECEQTFA | |
Retrocopy | EKPYNCLECGQSFADSSGLRSHQRTHTGEKPYNCLECGQSFAHSSGLRSHQRTHTGEKPYKCLECEQTFA |
Parental | QISTLHSHQRTHTGEKPFKCLECGQSCTHSSDLRSHQRTHTGEKPYKCLECGQSFAQSGNLSSHQRTHTG |
QISTLHSHQRTHTGEKPFKCLECGQSCTHSSDLRSHQRTHTGEKPYKCLECGQSFAQSGNLSSHQRTHTG | |
Retrocopy | QISTLHSHQRTHTGEKPFKCLECGQSCTHSSDLRSHQRTHTGEKPYKCLECGQSFAQSGNLSSHQRTHTG |
Parental | EKPYKCLECGQSFARSSGLRSHHRTHTREKPNNCLECGKSFAHSSGLRLHQRTHTGEKPYECLECGQSFS |
EKPYKCLECGQSFARSSGLRSHHRTHTREKPNNCLECGKSFAHSSGLRLHQRTHTGEKPYECLECGQSFS | |
Retrocopy | EKPYKCLECGQSFARSSGLRSHHRTHTREKPNNCLECGKSFAHSSGLRLHQRTHTGEKPYECLECGQSFS |
Parental | DCSTLRRHQRTHTGEKPYNCLECGQSFAHSSGLRSHQRTHTGEKPYNCLECGQSFAHSSGLRSHLRTHTG |
DCSTLRRHQRTHTGEKPYNCLECGQSFAHSSGLRSHQRTHTGEKPYNCLECGQSFAHSSGLRSHLRTHTG | |
Retrocopy | DCSTLRRHQRTHTGEKPYNCLECGQSFAHSSGLRSHQRTHTGEKPYNCLECGQSFAHSSGLRSHLRTHTG |
Parental | EKPYKCLECGQSFARRGNLVSHQKRTHTGEKPFRCLECGLSFTHNSELRSHQRTHTGEKPYKCLECGQSF |
EKPYKCLECGQSFARRGNLVSHQK.THTGEKP..CLECG.SFT....LRSHQRTHTGEKPY.CLEC.Q.F | |
Retrocopy | EKPYKCLECGQSFARRGNLVSHQK-THTGEKPYNCLECGQSFTQKGNLRSHQRTHTGEKPYECLECEQTF |
Parental | AQSGNLSSHQRTHTGEKPYKCLECGQSFARSSTLHAHQRTHTGEKPYNCLQCGQSFTHSSSLRRHQRTHT |
AQ...L.SHQRTHTGEKPYKCLEC.Q.FA...TLH.HQRTHTGEKP..CL.CG.SFTH.S.LR.HQRTHT | |
Retrocopy | AQIATLHSHQRTHTGEKPYKCLECEQTFAQIATLHSHQRTHTGEKPFRCLECGLSFTHNSELRSHQRTHT |
Parental | GEKPFKCLECGQSFTQSSGLRSHQRTHTGEKPFKCLECGQSFTYSSCLRKHQRTH |
GEKP.KCLECGQSF.QS..L.SHQRTHTGEKP.KCLECGQSF..SS.LR.H.RTH | |
Retrocopy | GEKPYKCLECGQSFAQSGNLSSHQRTHTGEKPYKCLECGQSFARSSGLRSHHRTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .56 RPM | 0 .16 RPM |
SRP009831_brain | 1 .33 RPM | 0 .33 RPM |
SRP009831_dewlap | 3 .84 RPM | 2 .15 RPM |
SRP009831_embryo | 1 .84 RPM | 0 .33 RPM |
SRP009831_heart | 0 .88 RPM | 0 .42 RPM |
SRP009831_liver | 0 .20 RPM | 0 .00 RPM |
SRP009831_lung | 0 .25 RPM | 0 .10 RPM |
SRP009831_ovary | 3 .13 RPM | 0 .77 RPM |
SRP009831_skeletal_muscle | 0 .07 RPM | 0 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000008838 | 1 retrocopy | |
Anolis carolinensis | ENSACAG00000023302 | 2 retrocopies | |
Anolis carolinensis | ENSACAG00000026389 | 2 retrocopies | |
Anolis carolinensis | ENSACAG00000026721 | 1 retrocopy | |
Anolis carolinensis | ENSACAG00000026996 | 1 retrocopy |
retro_acar_22 ,
|
Anolis carolinensis | ENSACAG00000027062 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007589 | 2 retrocopies | |
Equus caballus | ENSECAG00000010608 | 1 retrocopy | |
Equus caballus | ENSECAG00000021667 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013571 | 1 retrocopy |