RetrogeneDB ID: | retro_acar_34 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | AAWZ02038596:2228..3995(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000026225 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000023302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.58 % |
Parental protein coverage: | 65.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKPYNCLECGQSFADSSTLRKHQRTHTGEKPYKCLECGQNFSHNSQLHRHQRTHTGEKPYNCLECGQSFA |
.K....L.CG..F.....L..H...HTG...Y.C.ECG.NF.HNS.LH..Q..HTGEKPY.CLECGQS.. | |
Retrocopy | DKASKALQCGKCFTRRAHLQQHEKIHTGDEHYECMECGNNFTHNSNLH--QNSHTGEKPYTCLECGQSYT |
Parental | RSSVLRSHQRTHTGEKPYKCLECGHSFADSSTLRKHQRTHTGEKPYNCLECGQSFTQKGHLHTHQRTHTG |
R...L.SH.RTHTGEKPY.CLECG.SFA.S..LR.HQRTHTG.KPY.CLECGQ.FT..G.L..HQRTHTG | |
Retrocopy | RIANLHSHERTHTGEKPYTCLECGKSFAQSVHLRSHQRTHTGKKPYKCLECGQNFTNNGNLRRHQRTHTG |
Parental | EKPYKCLECGQSFAHSSGLRNHQRTHTGEKPYNCLECGQSFADSTGLRSHQRTHTGEKPYNCLECGQSFT |
EKPYKCLECGQSF..SS.LR.HQRTHTGEKPY.CLECGQSF.DS..LRSHQRTHTGEKPY.CLECG.S.T | |
Retrocopy | EKPYKCLECGQSFTDSSSLRSHQRTHTGEKPYKCLECGQSFTDSSSLRSHQRTHTGEKPYKCLECGLSYT |
Parental | QKGHFHTHQRTHTGEKPYNCMECGQSFTQKGHLHTHQRTHTGEKPYNCLECGQSFTQNSGLRTHQRTHTG |
.......H.RTHTGEKPY.C.ECGQSF.....L..HQRTHTGEKPYNCLECGQSFT..S.LR.HQRTHTG | |
Retrocopy | RSASLYSHLRTHTGEKPYTCLECGQSFILSSSLYSHQRTHTGEKPYNCLECGQSFTHSSTLRKHQRTHTG |
Parental | EKPYKCLECGQSFTQKGNLHKHQRTHTGEKPYKCLECGHSFARSSHLRSHHERTHTGEKPYKCLECGQSF |
EKPY.CLECGQSFT..GNL..HQ..HTGEKPYKCLECG.SF..SS.L.SH..RTHTGEKPYKCLECGQSF | |
Retrocopy | EKPYTCLECGQSFTFNGNLRRHQKIHTGEKPYKCLECGQSFIESSTLSSH-QRTHTGEKPYKCLECGQSF |
Parental | TQTSGLHRHQRTHTGEKPYKCLECGQSFTHSSGLRSHQRTHTGEKPYKCLECGQTFTHSSGLRSHQRTHT |
...S.L..HQRTHT.EKPYKCLECG.S...SS.L.SH.RTHTGEKPY.CLECGQ.FT.SSGLRSHQRTHT | |
Retrocopy | IDSSTLSSHQRTHTEEKPYKCLECGLSYKRSSDLLSHLRTHTGEKPYTCLECGQSFTWSSGLRSHQRTHT |
Parental | GDKSYTCLECGQSYTRSSSLRSHQRTHTGEKP---YTCLECGQSFTRSSGLRRHQRTHTGEKPYNCLECG |
G.KSYTCLECGQS.T.SS.L.SHQRTHTGEKP...Y.C.ECG.S..RS..LR.HQR.HTGEKPY.CLECG | |
Retrocopy | GEKSYTCLECGQSFTHSSNLHSHQRTHTGEKPCKPYKCSECGKSYARSENLRLHQRIHTGEKPYKCLECG |
Parental | QSFTQKGHLHSHQRTHT |
.SF..KG.L..HQRTHT | |
Retrocopy | KSFSIKGSLRRHQRTHT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 1 .25 RPM | 0 .53 RPM |
SRP009831_brain | 0 .66 RPM | 0 .47 RPM |
SRP009831_dewlap | 1 .39 RPM | 0 .76 RPM |
SRP009831_embryo | 2 .49 RPM | 0 .65 RPM |
SRP009831_heart | 1 .09 RPM | 0 .57 RPM |
SRP009831_liver | 0 .41 RPM | 0 .04 RPM |
SRP009831_lung | 0 .86 RPM | 0 .05 RPM |
SRP009831_ovary | 2 .12 RPM | 1 .00 RPM |
SRP009831_skeletal_muscle | 0 .07 RPM | 0 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000008838 | 1 retrocopy | |
Anolis carolinensis | ENSACAG00000023302 | 2 retrocopies |
retro_acar_3, retro_acar_34 ,
|
Anolis carolinensis | ENSACAG00000026389 | 2 retrocopies | |
Anolis carolinensis | ENSACAG00000026721 | 1 retrocopy | |
Anolis carolinensis | ENSACAG00000026996 | 1 retrocopy | |
Anolis carolinensis | ENSACAG00000027062 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007589 | 2 retrocopies | |
Equus caballus | ENSECAG00000010608 | 1 retrocopy | |
Equus caballus | ENSECAG00000021667 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013571 | 1 retrocopy |