RetrogeneDB ID: | retro_cpor_491 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_17:22452442..22453063(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000006103 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13 | ||
Ensembl ID: | ENSCPOG00000027348 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:H0W636] |
Percent Identity: | 75.59 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAPSRNGMILKP-HFHKDWQRRVATWFNQPARKIRRRKARQAKARR-IAPRPASGPIRPIVRCPTVRYHT |
.A.S.N.MILK..HFHK.W...V.TWFNQPA.KI...KA.QAK....IAPRP.SGPI.P.V..P.V.YH. | |
Retrocopy | LASSWNSMILKS<HFHKNWRGCVSTWFNQPAWKIHKHKACQAKVSL>IAPRPTSGPIQPTVHFPMVQYHP |
Parental | KVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGD |
KV.AGRGFSLEEL.VAGIHKKVARTIGISVDPRRRNK.TESLQ.NVQ.LKEY.SK.ILFPRKP.APKKGD | |
Retrocopy | KVPAGRGFSLEELQVAGIHKKVARTIGISVDPRRRNKFTESLQVNVQWLKEYCSKVILFPRKPLAPKKGD |
Parental | SSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVE |
SS.EELKLA....GPVMPIRNVYKKEKA.VITEEEKNFK..A.LRM..A.A.LF.I.AKRAKEAAEQD.E | |
Retrocopy | SSDEELKLA----GPVMPIRNVYKKEKAQVITEEEKNFKVLANLRMTHAKAHLFSIWAKRAKEAAEQDAE |
Parental | KKK |
KKK | |
Retrocopy | KKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 127 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 222 .67 RPM |
SRP017611_liver | 0 .00 RPM | 140 .46 RPM |
SRP040447_lung | 0 .00 RPM | 314 .10 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 301 .96 RPM |