RetrogeneDB ID: | retro_amel_1371 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193271.1:778975..779725(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000007786 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:G1LMH6] |
Percent Identity: | 81.32 % |
Parental protein coverage: | 53.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | KPPLNLNQNGKGKDSH-IVVIGHVDSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGK-GSFKYAWVL |
KPPL.LNQNGKGK..H........DSG.KSTTTGHLIYKCGGIDKRTIEKFEKE.AEMGK.GSFKYAW.L | |
Retrocopy | KPPLSLNQNGKGKVPH<STLLSLDDSG<KSTTTGHLIYKCGGIDKRTIEKFEKESAEMGK<GSFKYAWIL |
Parental | DKLKAERERGITI-DISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISK |
D.LKAE.E.GITI.DISL.KFETSKYYVTIID..GHRDFIKNMIT.TSQADC.VLIVA.GVGEFEA..SK | |
Retrocopy | DNLKAECECGITI>DISLQKFETSKYYVTIIDTTGHRDFIKNMITDTSQADCTVLIVATGVGEFEADVSK |
Parental | -NGQTREYALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIK-KIGYNPDTVAFVPISGWN |
.NGQT.E.ALLAYTLGVKQLI..VNKMDSTEPP.SQKRYEEI.KEVSTYIK.K....P.TVAFVPIS.WN | |
Retrocopy | >NGQTHEHALLAYTLGVKQLIISVNKMDSTEPP*SQKRYEEIIKEVSTYIK>KLATTP-TVAFVPISVWN |
Parental | GDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDK |
GDN.LEPSANMPWF.GWKVT.KDGNASGTTL.E.LD.ILPPT.PTDK | |
Retrocopy | GDNVLEPSANMPWF*GWKVTNKDGNASGTTLPEVLDRILPPTDPTDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007786 | 14 retrocopies | |
Canis familiaris | ENSCAFG00000013249 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000009629 | 1 retrocopy | |
Equus caballus | ENSECAG00000022260 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000342 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028081 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018533 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037742 | 15 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000007687 | 4 retrocopies | |
Drosophila melanogaster | FBgn0000557 | 1 retrocopy |