RetrogeneDB ID: | retro_eeur_625 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_369370:88845..89734(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSEEUG00000000342 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189] |
Percent Identity: | 87.67 % |
Parental protein coverage: | 63.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGS-FKYAWV-LDKLKAERE |
MGKEKTHINIVVIGHVDS.KSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGS.FKYAWV.LDKLKA... | |
Retrocopy | MGKEKTHINIVVIGHVDSSKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGS>FKYAWV<LDKLKADAK |
Parental | RGITIDISLWKFETS-KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHA |
.GIT....LWKFETS.KYYVTIID.PGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQT.EHA | |
Retrocopy | CGITMISPLWKFETS>KYYVTIIDTPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTHEHA |
Parental | LLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSAN |
LL.YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSAN | |
Retrocopy | LLVYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSAN |
Parental | MPWFKGWKITRKDGSASGTTLLEAXDCILP----TRTDLRLP-QDVYKIGGIGTVPVGRVETGVLKPGMV |
MPWFKGWKIT.KDGSASGTTLLEA.DCILP....T...LRLP.QDVYKIGGIGTVPVGRVETGVLKPGM. | |
Retrocopy | MPWFKGWKITQKDGSASGTTLLEALDCILPPTRPTHKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMM |
Parental | VTFAPVNVTTEVK--SVEMH |
VTFA....T...K....EMH | |
Retrocopy | VTFA-TQSTLQLK*NPIEMH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 254 .93 RPM | 1707 .16 RPM |
SRP017611_kidney | 756 .72 RPM | 4819 .75 RPM |
SRP017611_liver | 559 .98 RPM | 3570 .51 RPM |