RetrogeneDB ID: | retro_mmus_1850 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:8256223..8257587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eef1a1 | ||
Ensembl ID: | ENSMUSG00000037742 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881] |
Percent Identity: | 90.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKEKTHINIVVIGHVDSGKSTT-TGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER |
MGKEKTHINI.VIG.VDS.KSTT.TGHLIYKCGGI.KR.IEK....AAEMGKGSFKY.WVL.KLKAERE. | |
Retrocopy | MGKEKTHINIIVIGRVDSSKSTT<TGHLIYKCGGINKRSIEK----AAEMGKGSFKYTWVLYKLKAEREH |
Parental | GITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL |
GITIDISLWKF.TSKYYVTIIDAPGHRDFIKNMITGTSQADCA.LIVAAGVGEFE.GISKNGQT.EHALL | |
Retrocopy | GITIDISLWKFKTSKYYVTIIDAPGHRDFIKNMITGTSQADCAILIVAAGVGEFEPGISKNGQTLEHALL |
Parental | AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP |
AYTLGVKQLIV.VNKMDSTEPPYSQKRY.EIVKEVSTY.KKIGYNPDT.AFVPISGWNGDNMLEPSANMP | |
Retrocopy | AYTLGVKQLIVDVNKMDSTEPPYSQKRYKEIVKEVSTYMKKIGYNPDTIAFVPISGWNGDNMLEPSANMP |
Parental | WFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVT |
WFKGW.VTRKDG.ASGTTLLEALDCILPPTRPTDK.LRLPLQ.VYKIG.IGTVPVGRVETGVLKPGMV.T | |
Retrocopy | WFKGWEVTRKDGRASGTTLLEALDCILPPTRPTDKLLRLPLQGVYKIGSIGTVPVGRVETGVLKPGMVFT |
Parental | FAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNH |
FAPVNV.TEVKSVEMHHEALSEALPGDNVGFN.KNV.VKDVRRGNVAGDSKNDP..EAAGFTAQVIILNH | |
Retrocopy | FAPVNVKTEVKSVEMHHEALSEALPGDNVGFNIKNVLVKDVRRGNVAGDSKNDPSKEAAGFTAQVIILNH |
Parental | PGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYP |
PGQISAGYAPVLDCH...IACKF.ELKEKIDRRSGKKLEDGPKFL.SGDAAIVD..P.KPMCVESFSDYP | |
Retrocopy | PGQISAGYAPVLDCH---IACKFVELKEKIDRRSGKKLEDGPKFLTSGDAAIVDIIPVKPMCVESFSDYP |
Parental | PLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK |
PLG..AVRDMRQTVAVGVIKAVDKKA...GKVTKSAQKAQKAK | |
Retrocopy | PLGHSAVRDMRQTVAVGVIKAVDKKAP*VGKVTKSAQKAQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .26 RPM | 938 .67 RPM |
SRP007412_cerebellum | 0 .09 RPM | 652 .71 RPM |
SRP007412_heart | 0 .25 RPM | 465 .27 RPM |
SRP007412_kidney | 1 .10 RPM | 1781 .75 RPM |
SRP007412_liver | 0 .74 RPM | 2430 .48 RPM |
SRP007412_testis | 0 .18 RPM | 1060 .92 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_67639 | 310 libraries | 464 libraries | 293 libraries | 3 libraries | 2 libraries |