RetrogeneDB ID: | retro_dord_509 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_24864:8296..9088(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eef1a1 | ||
Ensembl ID: | ENSDORG00000009629 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881] |
Percent Identity: | 89.39 % |
Parental protein coverage: | 56.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DNMLEPSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPL-DVY-IGG-GTVPVGRV- |
DNML.PSANMPWFKGWKVTR.D.SASGTTLL.ALDCILPPTRPTDKPLRLPL.DVY.IGG.GTVPVGRV. | |
Retrocopy | DNMLVPSANMPWFKGWKVTREDSSASGTTLLKALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVE |
Parental | TGVSKRGMVVTFAPVNVTTEVKSVEMHHEALSEALPEDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAA |
TGV.K.GMVV.FAPVNVTTEVKSVEMH.EAL.EALP.DNV.FNVKNVSVKD...GNVAGDSKNDPPMEAA | |
Retrocopy | TGVLKPGMVVIFAPVNVTTEVKSVEMHQEALNEALPGDNVVFNVKNVSVKDIHCGNVAGDSKNDPPMEAA |
Parental | GFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGK |
.FTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAE.KEK.D.RSGKKLEDGP.FLKSGDAAIVDMVPGK | |
Retrocopy | DFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAERKEKTDSRSGKKLEDGPIFLKSGDAAIVDMVPGK |
Parental | PMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK |
.MCVESFSDYPPL.RFAV.D.RQTVAVGVIKAVDKKAAGA.KVTKSAQKAQKAK | |
Retrocopy | SMCVESFSDYPPLDRFAVCDTRQTVAVGVIKAVDKKAAGASKVTKSAQKAQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |