RetrogeneDB ID: | retro_itri_195 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393279.1:36313304..36314223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSSTOG00000007687 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189] |
Percent Identity: | 81.03 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYK-CGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER |
MGKEKTH.NIVVIGH.DSGKST.TGHLIYK...GI.KRTIEKFE..AAEM.K.SFK.AWV.DKLKA..E. | |
Retrocopy | MGKEKTHENIVVIGHIDSGKSTITGHLIYK<ICGINKRTIEKFEDKAAEMAKDSFK*AWVFDKLKAKPEC |
Parental | GITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL |
G.TI..SLWKFETSKYYVTIID.PGHR..IKNMITG.SQADCAVLI.AAG..EFEAGISKNGQTRE.ALL | |
Retrocopy | GTTINVSLWKFETSKYYVTIIDVPGHRNSIKNMITGMSQADCAVLIFAAG--EFEAGISKNGQTREPALL |
Parental | AYTLGVKQLIVGVNKMDSTE-PP-YSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSAN |
AYTLG.KQLIV..NKMDSTE.PP.Y.QKR.EEI.KEVSTYIK.IGYNPDTVAFVPISGW.G.NMLEPSAN | |
Retrocopy | AYTLGRKQLIVDINKMDSTEPPP<YNQKR*EEIIKEVSTYIKNIGYNPDTVAFVPISGWRGNNMLEPSAN |
Parental | MPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMV |
MPWFKGWKVT.KDGSASGT.LLEALDCILPPT.PTDKPL.LP..DVY.IGGIGT.PVG.V....LKP..V | |
Retrocopy | MPWFKGWKVTHKDGSASGTILLEALDCILPPTHPTDKPLHLPFLDVYRIGGIGTLPVGQV*SDILKPSLV |
Parental | VTFAPVNVTTEVKSVEMHHEALSEALPGDNV |
V.FAPVNVTTEVKS.E..HEALSEAL.G.NV | |
Retrocopy | VAFAPVNVTTEVKSIEIYHEALSEALSGNNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |