RetrogeneDB - Parental gene ENSMUSG00000037742 details

Parental gene:	Eef1a1, ENSMUSG00000037742
Aliases:	None
Description:	eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
Organism:	*Mouse (Mus musculus)*
Coordinates:	9:78478448..78489151(-)

                            
>ENSMUSG00000037742
ATGGGAAAGGAAAAGACTCACATCAACATCGTCGTAATCGGACACGTAGATTCCGGCAAGTCCACCACAACCGGCCACCT

GATCTACAAATGTGGTGGAATCGACAAGCGAACCATCGAAAAGTTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT

TCAAGTACGCCTGGGTCTTAGACAAACTGAAAGCTGAGCGTGAGCGTGGTATCACTATTGACATCTCCCTGTGGAAATTC

GAGACCAGCAAATACTATGTGACCATCATTGATGCCCCAGGACACAGAGACTTCATCAAAAACATGATTACAGGCACATC

CCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAACGGGCAGACCC

GCGAGCATGCTCTTCTGGCTTACACCCTGGGTGTGAAACAGCTGATTGTTGGTGTCAACAAAATGGATTCCACCGAGCCA

CCATACAGTCAGAAGAGATACGAGGAAATCGTTAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCTGACAC

AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGTTCAAGGGAT

GGAAAGTCACCCGCAAAGATGGCAGTGCCAGTGGCACCACGCTGCTGGAAGCTTTGGATTGTATCCTACCACCAACTCGT

CCAACTGACAAGCCCCTGCGACTGCCCCTCCAGGATGTCTATAAAATTGGAGGCATTGGCACTGTCCCTGTGGGCCGAGT

GGAGACTGGTGTTCTCAAGCCTGGCATGGTGGTTACCTTTGCTCCAGTCAATGTAACAACTGAAGTCAAGTCTGTTGAAA

TGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTAAAGAACGTGTCGGTCAAAGATGTT

AGACGAGGCAATGTTGCTGGTGACAGCAAAAACGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCT

GAACCATCCAGGCCAAATCAGTGCTGGCTACGCTCCTGTTCTGGATTGTCACACAGCCCACATAGCATGCAAGTTTGCTG

AGCTTAAAGAAAAGATCGATCGTCGTTCTGGTAAGAAGCTGGAAGATGGCCCCAAGTTCCTGAAGTCTGGCGATGCTGCC

ATTGTTGATATGGTCCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGACTACCCTCCACTTGGTCGCTTTGCTGTTCG

TGACATGAGGCAGACAGTTGCTGTGGGTGTCATCAAAGCTGTGGACAAGAAGGCTGCTGGAGCTGGCAAAGTCACCAAGT

CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Library	Parental gene expression (RPM)
SRP007412_brain	938 .67 RPM
SRP007412_cerebellum	652 .71 RPM
SRP007412_heart	465 .27 RPM
SRP007412_kidney	1781 .75 RPM
SRP007412_liver	2430 .48 RPM
SRP007412_testis	1060 .92 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000007786	possible_ortholog	14 retrogenes	retro_amel_1064, retro_amel_1072, retro_amel_1079, retro_amel_1140, retro_amel_1167, retro_amel_1203, retro_amel_1227, retro_amel_1283, retro_amel_1371, retro_amel_160, retro_amel_1742, retro_amel_1797, retro_amel_1855, retro_amel_200,
Bos taurus	ENSBTAG00000014534	possible_ortholog	3 retrogenes	retro_btau_114, retro_btau_115, retro_btau_192,
Canis familiaris	ENSCAFG00000012222	possible_ortholog	1 retrogene	retro_cfam_1478,
Canis familiaris	ENSCAFG00000013249	possible_ortholog	1 retrogene	retro_cfam_1007,
Callithrix jacchus	ENSCJAG00000010051	possible_ortholog	6 retrogenes	retro_cjac_1431, retro_cjac_3075, retro_cjac_34, retro_cjac_3735, retro_cjac_733, retro_cjac_97,
Cavia porcellus	ENSCPOG00000004067	possible_ortholog	15 retrogenes	retro_cpor_1150, retro_cpor_1162, retro_cpor_1191, retro_cpor_1256, retro_cpor_1393, retro_cpor_1492, retro_cpor_1499, retro_cpor_348, retro_cpor_381, retro_cpor_387, retro_cpor_413, retro_cpor_709, retro_cpor_891, retro_cpor_918, retro_cpor_959,
Dipodomys ordii	ENSDORG00000009629	ortholog_one2one	1 retrogene	retro_dord_509,
Equus caballus	ENSECAG00000020363	possible_ortholog	2 retrogenes	retro_ecab_66, retro_ecab_93,
Equus caballus	ENSECAG00000022260	possible_ortholog	1 retrogene	retro_ecab_802,
Erinaceus europaeus	ENSEEUG00000000342	ortholog_one2one	3 retrogenes	retro_eeur_407, retro_eeur_492, retro_eeur_625,
Echinops telfairi	ENSETEG00000004236	possible_ortholog	14 retrogenes	retro_etel_1189, retro_etel_1248, retro_etel_1260, retro_etel_1429, retro_etel_1436, retro_etel_1472, retro_etel_1578, retro_etel_1602, retro_etel_1682, retro_etel_1808, retro_etel_2135, retro_etel_366, retro_etel_411, retro_etel_830,
Felis catus	ENSFCAG00000030977	possible_ortholog	14 retrogenes	retro_fcat_1021, retro_fcat_1388, retro_fcat_1569, retro_fcat_1683, retro_fcat_1825, retro_fcat_184, retro_fcat_1915, retro_fcat_220, retro_fcat_221, retro_fcat_334, retro_fcat_515, retro_fcat_566, retro_fcat_688, retro_fcat_737,
Gorilla gorilla	ENSGGOG00000025675	possible_ortholog	20 retrogenes	retro_ggor_1193, retro_ggor_1258, retro_ggor_1305, retro_ggor_1444, retro_ggor_1529, retro_ggor_20, retro_ggor_2006, retro_ggor_2021, retro_ggor_2056, retro_ggor_2066, retro_ggor_2205, retro_ggor_2526, retro_ggor_2637, retro_ggor_2826, retro_ggor_322, retro_ggor_375, retro_ggor_790, retro_ggor_860, retro_ggor_919, retro_ggor_978,
Loxodonta africana	ENSLAFG00000028081	possible_ortholog	1 retrogene	retro_lafr_651,
Microcebus murinus	ENSMICG00000015319	possible_ortholog	21 retrogenes	retro_mmur_1027, retro_mmur_1116, retro_mmur_1145, retro_mmur_1182, retro_mmur_1190, retro_mmur_12, retro_mmur_1282, retro_mmur_1316, retro_mmur_1339, retro_mmur_1343, retro_mmur_1350, retro_mmur_1568, retro_mmur_171, retro_mmur_26, retro_mmur_273, retro_mmur_49, retro_mmur_682, retro_mmur_729, retro_mmur_825, retro_mmur_877, retro_mmur_9,
Myotis lucifugus	ENSMLUG00000013537	possible_ortholog	24 retrogenes	retro_mluc_110, retro_mluc_1252, retro_mluc_1392, retro_mluc_1430, retro_mluc_1558, retro_mluc_1628, retro_mluc_1644, retro_mluc_1853, retro_mluc_1901, retro_mluc_1910, retro_mluc_2071, retro_mluc_2148, retro_mluc_2154, retro_mluc_2277, retro_mluc_2355, retro_mluc_2358, retro_mluc_2359, retro_mluc_2391, retro_mluc_441, retro_mluc_470, retro_mluc_677, retro_mluc_950, retro_mluc_956, retro_mluc_966,
Macaca mulatta	ENSMMUG00000004852	possible_ortholog	15 retrogenes	retro_mmul_1375, retro_mmul_1407, retro_mmul_1518, retro_mmul_1525, retro_mmul_1690, retro_mmul_1707, retro_mmul_1721, retro_mmul_1739, retro_mmul_1743, retro_mmul_1906, retro_mmul_2196, retro_mmul_2250, retro_mmul_323, retro_mmul_6, retro_mmul_848,
Monodelphis domestica	ENSMODG00000018533	possible_ortholog	4 retrogenes	retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mustela putorius furo	ENSMPUG00000003816	possible_ortholog	6 retrogenes	retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo	ENSMPUG00000004271	possible_ortholog	10 retrogenes	retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Nomascus leucogenys	ENSNLEG00000001476	possible_ortholog	6 retrogenes	retro_nleu_1492, retro_nleu_1584, retro_nleu_1754, retro_nleu_1901, retro_nleu_235, retro_nleu_829,
Oryctolagus cuniculus	ENSOCUG00000008481	possible_ortholog	3 retrogenes	retro_ocun_1102, retro_ocun_187, retro_ocun_71,
Otolemur garnettii	ENSOGAG00000009152	possible_ortholog	10 retrogenes	retro_ogar_1215, retro_ogar_1622, retro_ogar_1779, retro_ogar_1840, retro_ogar_2281, retro_ogar_2526, retro_ogar_2557, retro_ogar_3013, retro_ogar_3046, retro_ogar_3271,
Pongo abelii	ENSPPYG00000016777	possible_ortholog	1 retrogene	retro_pabe_12,
Pan troglodytes	ENSPTRG00000018347	possible_ortholog	1 retrogene	retro_ptro_71,
Ictidomys tridecemlineatus	ENSSTOG00000007687	ortholog_one2one	4 retrogenes	retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Vicugna pacos	ENSVPAG00000007637	possible_ortholog	9 retrogenes	retro_vpac_369, retro_vpac_404, retro_vpac_510, retro_vpac_511, retro_vpac_523, retro_vpac_544, retro_vpac_582, retro_vpac_592, retro_vpac_606,
Drosophila melanogaster	FBgn0000557	ortholog_many2many	1 retrogene	retro_dmel_9,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmus_480	52.76	61.47	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmus_483	93.95	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmus_1349	87.43	78.57	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_mmus_1518	92.47	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_mmus_1667	94.37	83.98	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_mmus_1783	93.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_mmus_1816	95.25	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_mmus_1849	90.32	60.17	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_mmus_1850	90.28	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_mmus_1864	89.59	57.79	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_mmus_1909	96.85	95.89	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_mmus_2363	89.80	63.64	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_mmus_2583	93.43	88.96	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_mmus_2902	79.78	57.79	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_mmus_3249	89.12	73.59	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMUSG00000037742 retrocopies

Parental gene:

Eef1a1, ENSMUSG00000037742