RetrogeneDB ID: | retro_amel_389 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192417.1:1540228..1541227(+) | ||
Located in intron of: | ENSAMEG00000009699 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSAMEG00000017854 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 71.47 % |
Parental protein coverage: | 86.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SKMATLKDQLIQNLLKEEHTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHG |
S.MAT.K..LI.N...EE....NK....G.G.VGMACAISIL...L.DELALVDV.EDKLKGE.MDLQHG | |
Retrocopy | SEMATIKCELIKNFTSEEAVHHNKVSIIGTGSVGMACAISILLRGLTDELALVDVNEDKLKGETMDLQHG |
Parental | SLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSS |
S.F...P.IVS.KDY.VTANS.LV.ITAGARQ..GE.RLNLVQRNV.IFK..I..I..YSP.CKL.VVS. | |
Retrocopy | SPFVKMPTIVSSKDYLVTANSSLVVITAGARQEKGETRLNLVQRNVDIFKLMISSITQYSPRCKLIVVSN |
Parental | PVDILTYVAWKISGFPKNRVIGSGCNLDSARFHYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAG |
PVDILTYV.WK.S.FP.NRVIGSGCNLD.ARF..L.G..LG.H..SCHGWVLGEHGDSSVPVWSGVN.AG | |
Retrocopy | PVDILTYVTWKLSEFPPNRVIGSGCNLDTARFRFLIGQKLGIHSESCHGWVLGEHGDSSVPVWSGVNIAG |
Parental | VSLKNLHPDLGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESMMKNLRRVHPISTLVK |
V.LK.L..D.GTD.D.EQWK.VHK.V..SAY..IK.KGYTSWAIGLSVADL.ES..KNLRRVHP.ST..K | |
Retrocopy | VPLKDLNSDIGTDQDPEQWKNVHKDVIASAYKIIKMKGYTSWAIGLSVADLTESIVKNLRRVHPVSTIIK |
Parental | GLYGIKDDVFLSVPCILGQNGISDVVKVTLTPEEEACLKKSADTLWEIQKELQ |
GLYGI...VFLSVPCILG.NGI.D..K..LT.EE.ACLKKSA.TLW.IQ.EL. | |
Retrocopy | GLYGINEEVFLSVPCILGENGIADLIKIKLTTEEQACLKKSAETLWGIQRELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |