RetrogeneDB ID: | retro_btau_1095 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 26:11812770..11813472(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000020790 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.61596 | ||
Ensembl ID: | ENSBTAG00000005265 | ||
Aliases: | None | ||
Description: | zinc finger CCHC domain-containing protein 9 [Source:RefSeq peptide;Acc:NP_001094525] |
Percent Identity: | 99.57 % |
Parental protein coverage: | 86.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KSKQLEANRLSLKNDAPQAKHRKNKKKKEYLNEDVNGFMEYLRQNSQMLHNGEVIATDSQKVREEIEVAL |
K.KQLEANRLSLKNDAPQAKHRKNKKKKEYLNEDVNGFMEYLRQNSQMLHNGEVIATDSQKVREEIEVAL | |
Retrocopy | KRKQLEANRLSLKNDAPQAKHRKNKKKKEYLNEDVNGFMEYLRQNSQMLHNGEVIATDSQKVREEIEVAL |
Parental | KKDSRREGRRLKRQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPA |
KKDSRREGRRLKRQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPA | |
Retrocopy | KKDSRREGRRLKRQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPA |
Parental | LGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRVVTVGRWAKGMSA |
LGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRVVTVGRWAKGMSA | |
Retrocopy | LGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRVVTVGRWAKGMSA |
Parental | DYEEILDVPKPQKPKTKIPKVVNF |
DYEEILDVPKPQKPKTKIPKVVNF | |
Retrocopy | DYEEILDVPKPQKPKTKIPKVVNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 34 .03 RPM |
ERP005899_muscle | 0 .05 RPM | 10 .14 RPM |
SRP017611_brain | 0 .05 RPM | 5 .48 RPM |
SRP017611_kidney | 0 .06 RPM | 18 .14 RPM |
SRP017611_liver | 0 .00 RPM | 11 .85 RPM |
SRP030211_testis | 0 .06 RPM | 7 .68 RPM |