Parental gene:

ZCCHC9, ENSCAFG00000008703

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:3:25974532..25981559(-)


>ENSCAFG00000008703
ATGACCAGGTGGGCACGAGTTACCACCACGCGTACCAAGAGACCTTTGGCTGCAACATCATGGGAAGACATGAAGAAGGG
GTCCTGTGAGGGAGAAAGCCAAAACCTACCAAAGAGTAAACAACTTGAAGCCAATAGGCTTTCTGTGAAAAATGATGCTC
CCAAAGCAAAACACAAAAAGAACAAAAAGAAAAAGGAGTATTTAAATGAAGATGTAAATGGATTCATGGAATACCTAAGA
CAGAATCCACAGATGATTCACAATGGAGAGATGATAGCAACAGACAGTCAGGAGGTAAGGGAAGAAATTGCAATTGCCTT
AAAGAAAGACAGTCGACGGGAAGGAAGAAGACTGAAAAGACAAGCAGCAAAGAAAAATGCAATGGTATGTTTCCATTGTA
GAAAACCTGGCCATGGGATTGCAGATTGCCCAGCTGCCCTTGAGAATCAAGATATGGGCACTGGAATATGTTATCGCTGT
GGGTCCACAGAGCACGAAATAACCAAATGCAAAGCCAAAGTAGACCCAGCTCTTGGTGAATTTCCTTTTGCAAAATGTTT
TGTTTGTGGGGAAATGGGACATCTGTCCAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCTGATGGTGGTTGCTGTA
GACTTTGTGGCTCCGTGGAACACTTTAAGAAAGATTGCCCTGAGAGTCAAAATTCAGATCGAATGGTCACAGTTGGTCGC
TGGGCAAAGGGAATGAGTGCGGACTATGAAGAAATTTTGGATGTGCCTAAACCACAGAAACCCAAAACAAAGATACCTAA
AGTTGTTAATTTTTGA

Library Parental gene expression (RPM)
SRP017611_brain 3 .02 RPM
SRP017611_kidney 7 .99 RPM
SRP017611_liver 4 .64 RPM
SRP012049_cerebellum 5 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005265 ortholog_one2many 1 retrogene
retro_btau_1095,
Choloepus hoffmanni ENSCHOG00000005268 ortholog_one2one 3 retrogenes
retro_chof_140, retro_chof_2143, retro_chof_268,
Callithrix jacchus ENSCJAG00000019486 ortholog_one2one 4 retrogenes
retro_cjac_1236, retro_cjac_2906, retro_cjac_3528, retro_cjac_909,
Echinops telfairi ENSETEG00000003838 ortholog_one2one 2 retrogenes
retro_etel_325, retro_etel_880,
Homo sapiens ENSG00000131732 ortholog_one2one 1 retrogene
retro_hsap_1799,
Gorilla gorilla ENSGGOG00000013790 ortholog_one2one 1 retrogene
retro_ggor_706,
Microcebus murinus ENSMICG00000016266 ortholog_one2one 5 retrogenes
retro_mmur_125, retro_mmur_1325, retro_mmur_1341, retro_mmur_606, retro_mmur_819,
Myotis lucifugus ENSMLUG00000001886 ortholog_one2one 1 retrogene
retro_mluc_799,
Macaca mulatta ENSMMUG00000020655 ortholog_one2many 1 retrogene
retro_mmul_797,
Mus musculus ENSMUSG00000021621 ortholog_one2one 1 retrogene
retro_mmus_1920,
Otolemur garnettii ENSOGAG00000002543 ortholog_one2many 6 retrogenes
retro_ogar_1467, retro_ogar_2125, retro_ogar_2426, retro_ogar_2941, retro_ogar_3076, retro_ogar_459,
Pongo abelii ENSPPYG00000015604 ortholog_one2one 1 retrogene
retro_pabe_1476,
Pan troglodytes ENSPTRG00000017047 ortholog_one2one 2 retrogenes
retro_ptro_1205, retro_ptro_602,
Rattus norvegicus ENSRNOG00000014927 ortholog_one2one 2 retrogenes
retro_rnor_1164, retro_rnor_2160,
Sorex araneus ENSSARG00000008580 ortholog_one2one 2 retrogenes
retro_sara_216, retro_sara_78,
Sarcophilus harrisii ENSSHAG00000014504 ortholog_one2one 1 retrogene
retro_shar_734,
Ictidomys tridecemlineatus ENSSTOG00000001407 ortholog_one2one 2 retrogenes
retro_itri_422, retro_itri_696,
Tarsius syrichta ENSTSYG00000012423 ortholog_one2one 1 retrogene
retro_tsyr_244,
Tursiops truncatus ENSTTRG00000013796 ortholog_one2one 1 retrogene
retro_ttru_819,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_675 99.51 76.01
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2. retro_cfam_1547 95.96 100.00
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Download FASTA sequences of all ENSCAFG00000008703 retrocopies