Parental gene:

ZCCHC9, ENSPPYG00000015604

Aliases:None
Description:zinc finger CCHC domain-containing protein 9 [Source:RefSeq peptide;Acc:NP_001127522]
Organism:Orangutan (Pongo abelii)
Coordinates:5:81493123..81506122(+)


>ENSPPYG00000015604
ATGACCAGGTGGGCCCGAGTTAGTACCACATATAACAAGAGACCCTTGCCTGCAACATCATGGGAGGACATGAAAAAGGG
ATCCTTTGAGGGAAGAAGCCAAAACCTACCAAAGCGTAAACAACTTGAAGCCAATAGGCTATCCCTCAAAAATGATGCAC
CCCAAGCAAAACATAAAAAGAACAAAAAGAAAAAAGAGTACTTAAATGAAGATGTGAATGGATTCATGGAATACCTAAGA
CAGAATTCACAGATGGTTCACAACGGGCAGATTATAGCAACAGACAGTGAGGAAGTAAGGGAAGAAATTGCAGTTGCTTT
AAAGAAAGACAGTCGACGGGAAGGAAGAAGATTAAAAAGACAAGCTGCAAAGAAAAATGCAATGGTGTGTTTCCATTGTA
GAAAACCTGGTCATGGAATTGCAGATTGCCCTGCTGCCCTTGAAAATCAAGACATGGGCACTGGGATATGTTACAGGTGT
GGGTCCACAGAGCACGAAATAACCAAGTGTAAGGCTAAAGTAGACCCGGCTCTTGGCGAATTTCCTTTTGCAAAATGTTT
TGTTTGTGGAGAAATGGGGCACCTGTCTAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCTGATGGTGGTGGTTGCA
AACTTTGTGGCTCTGTGGAACATTTAAAGAAAGATTGCCCTGAAAGTCAGAATTCAGAGCGAATGGTCACAGTTGGTCGC
TGGGCAAAGGGAATGAGTGCAGACTATGAAGAAATTTTGGATGCACCTAAACCGCAAAAACCCAAAACAAAAATACCTAA
AGTTGTTAATTTTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .84 RPM
SRP007412_cerebellum 19 .21 RPM
SRP007412_heart 9 .18 RPM
SRP007412_kidney 19 .46 RPM
SRP007412_liver 27 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005265 ortholog_one2many 1 retrogene
retro_btau_1095,
Canis familiaris ENSCAFG00000008703 ortholog_one2one 2 retrogenes
retro_cfam_1547, retro_cfam_675,
Choloepus hoffmanni ENSCHOG00000005268 ortholog_one2one 3 retrogenes
retro_chof_140, retro_chof_2143, retro_chof_268,
Callithrix jacchus ENSCJAG00000019486 ortholog_one2one 4 retrogenes
retro_cjac_1236, retro_cjac_2906, retro_cjac_3528, retro_cjac_909,
Echinops telfairi ENSETEG00000003838 ortholog_one2one 2 retrogenes
retro_etel_325, retro_etel_880,
Homo sapiens ENSG00000131732 ortholog_one2one 1 retrogene
retro_hsap_1799,
Gorilla gorilla ENSGGOG00000013790 ortholog_one2one 1 retrogene
retro_ggor_706,
Myotis lucifugus ENSMLUG00000001886 ortholog_one2one 1 retrogene
retro_mluc_799,
Macaca mulatta ENSMMUG00000020655 ortholog_one2many 1 retrogene
retro_mmul_797,
Mus musculus ENSMUSG00000021621 ortholog_one2one 1 retrogene
retro_mmus_1920,
Otolemur garnettii ENSOGAG00000002543 possible_ortholog 6 retrogenes
retro_ogar_1467, retro_ogar_2125, retro_ogar_2426, retro_ogar_2941, retro_ogar_3076, retro_ogar_459,
Pan troglodytes ENSPTRG00000017047 ortholog_one2one 2 retrogenes
retro_ptro_1205, retro_ptro_602,
Rattus norvegicus ENSRNOG00000014927 ortholog_one2one 2 retrogenes
retro_rnor_1164, retro_rnor_2160,
Sorex araneus ENSSARG00000008580 ortholog_one2one 2 retrogenes
retro_sara_216, retro_sara_78,
Sarcophilus harrisii ENSSHAG00000014504 ortholog_one2one 1 retrogene
retro_shar_734,
Ictidomys tridecemlineatus ENSSTOG00000001407 ortholog_one2one 2 retrogenes
retro_itri_422, retro_itri_696,
Tursiops truncatus ENSTTRG00000013796 ortholog_one2one 1 retrogene
retro_ttru_819,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1476 83.13 60.89
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000015604 retrocopies