RetrogeneDB ID: | retro_hsap_1799 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:5415362..5415857(-) | ||
Located in intron of: | ENSG00000091592 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCCHC9 | ||
Ensembl ID: | ENSG00000131732 | ||
Aliases: | ZCCHC9, PPP1R41 | ||
Description: | zinc finger, CCHC domain containing 9 [Source:HGNC Symbol;Acc:25424] |
Percent Identity: | 77.58 % |
Parental protein coverage: | 60.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LKKDSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDP |
L..DS..E.RR.KRQ.AKKNAMVCFHCRKPG.GIADCPAALENQDMGT..CY.CGST.HEITKCKAKVDP | |
Retrocopy | LQEDSQWEVRRFKRQGAKKNAMVCFHCRKPGRGIADCPAALENQDMGTRRCYKCGSTDHEITKCKAKVDP |
Parental | ALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGRWAKGMS |
.LGE.PFA.CFVCGEMGHLSRSCPDNPKGLYADG.GC.L.GSVEHLKKDCPES.NS.RM.TVG.WAKG.S | |
Retrocopy | PLGECPFAECFVCGEMGHLSRSCPDNPKGLYADGSGCQLHGSVEHLKKDCPESENSDRMATVGLWAKGIS |
Parental | ADYEEILDVPKPQKPKTKIPKVVNF |
ADYE.I.D...........PK.VNF | |
Retrocopy | ADYEDIVDAXXXXXXXXXXPKGVNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .10 RPM | 9 .84 RPM |
bodymap2_adrenal | 0 .70 RPM | 17 .17 RPM |
bodymap2_brain | 0 .00 RPM | 8 .60 RPM |
bodymap2_breast | 0 .82 RPM | 17 .53 RPM |
bodymap2_colon | 0 .15 RPM | 17 .77 RPM |
bodymap2_heart | 0 .00 RPM | 5 .93 RPM |
bodymap2_kidney | 0 .00 RPM | 22 .03 RPM |
bodymap2_liver | 0 .02 RPM | 18 .00 RPM |
bodymap2_lung | 0 .11 RPM | 8 .32 RPM |
bodymap2_lymph_node | 0 .35 RPM | 19 .26 RPM |
bodymap2_ovary | 0 .15 RPM | 26 .16 RPM |
bodymap2_prostate | 0 .03 RPM | 25 .11 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .46 RPM |
bodymap2_testis | 0 .15 RPM | 20 .12 RPM |
bodymap2_thyroid | 0 .11 RPM | 15 .67 RPM |
bodymap2_white_blood_cells | 0 .26 RPM | 20 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1205 |
Pongo abelii | retro_pabe_1476 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005265 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008703 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005268 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000019486 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000003838 | 2 retrocopies | |
Homo sapiens | ENSG00000131732 | 1 retrocopy |
retro_hsap_1799 ,
|
Gorilla gorilla | ENSGGOG00000013790 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001886 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020655 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021621 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002543 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000015604 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017047 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000014927 | 2 retrocopies | |
Sorex araneus | ENSSARG00000008580 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014504 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001407 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000013796 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .08 RPM |
GBR_HG00099 | 0 .12 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .10 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .10 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .14 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .11 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .07 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .08 RPM |
YRI_NA19213 | 0 .07 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .06 RPM |