Parental gene:

ZCCHC9, ENSSTOG00000001407

Aliases:None
Description:zinc finger, CCHC domain containing 9 [Source:HGNC Symbol;Acc:25424]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393279.1:618817..625306(+)


>ENSSTOG00000001407
ATGACCAGGTGGGCACGAGTTACTACCACACATAATAAGAGACCCTTGCCTGCAACATCATGGGAGGACATGAAGAAGGG
GTCCTTGGAGGGAACAAGCCAAAATCGTAAACAACCTGAAGTCAATAGACTGTCCCTTAAAAATGTTGCACCCCAAGCAA
AACATAAAAAGAACAAAAAGAAGAAAGAATACTTAAATGAAGATGTGAATGGTTTCATGGAATACCTAAAACAGAACTCA
CAGATGGTTCACAATGGGGAGATGATAGCAATGGACAGCCAGGAAGTAAGGGAAGAAATTGCAGTTGCTTTAAAGAAAGA
CAGTCGACGGGAAGGAAGACGATTAAAAAGACAAGCAGCAAAGAAAAATGCAATGGTATGTTTCCACTGTAGAAAACCTG
GCCATGGAGTTGCAGATTGCCCAGCTGCCCTTGAAAATCAAGATATGGGCACTGGAATATGTTATCGATGTGGGTCCACA
GAGCATGAAATAACCAAGTGCAAAGCTAAAGTAGACCCAGCTCTTGGTGAATTTCCTTTTGCAAAATGTTTTGTTTGTGG
GGAAATGGGGCATCTGTCCCGTTCATGTCCTGATAATCCCAAAGGACTCTATGCTGATGGTGGTGGTTGCAAACTTTGTG
GTTCTGTGGAACACTTTAAGAAAGATTGCCCTGAAAGTCAGAATTCAGATCGAATGGTCACAGTTGGTCGCTGGGCAAAA
GGGATGAGTGCAGACTATGAAGAAATTTTGGATATGCCAAAACCAAAGAAATCCAAAACAAAAATACCTAAAGTTGTCAA
TTTTTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005265 ortholog_one2many 1 retrogene
retro_btau_1095,
Canis familiaris ENSCAFG00000008703 ortholog_one2one 2 retrogenes
retro_cfam_1547, retro_cfam_675,
Choloepus hoffmanni ENSCHOG00000005268 ortholog_one2one 3 retrogenes
retro_chof_140, retro_chof_2143, retro_chof_268,
Callithrix jacchus ENSCJAG00000019486 ortholog_one2one 4 retrogenes
retro_cjac_1236, retro_cjac_2906, retro_cjac_3528, retro_cjac_909,
Echinops telfairi ENSETEG00000003838 ortholog_one2one 2 retrogenes
retro_etel_325, retro_etel_880,
Homo sapiens ENSG00000131732 ortholog_one2one 1 retrogene
retro_hsap_1799,
Gorilla gorilla ENSGGOG00000013790 ortholog_one2one 1 retrogene
retro_ggor_706,
Microcebus murinus ENSMICG00000016266 ortholog_one2one 5 retrogenes
retro_mmur_125, retro_mmur_1325, retro_mmur_1341, retro_mmur_606, retro_mmur_819,
Myotis lucifugus ENSMLUG00000001886 ortholog_one2one 1 retrogene
retro_mluc_799,
Macaca mulatta ENSMMUG00000020655 ortholog_one2many 1 retrogene
retro_mmul_797,
Mus musculus ENSMUSG00000021621 ortholog_one2one 1 retrogene
retro_mmus_1920,
Otolemur garnettii ENSOGAG00000002543 ortholog_one2many 6 retrogenes
retro_ogar_1467, retro_ogar_2125, retro_ogar_2426, retro_ogar_2941, retro_ogar_3076, retro_ogar_459,
Pongo abelii ENSPPYG00000015604 ortholog_one2one 1 retrogene
retro_pabe_1476,
Pan troglodytes ENSPTRG00000017047 ortholog_one2one 2 retrogenes
retro_ptro_1205, retro_ptro_602,
Rattus norvegicus ENSRNOG00000014927 ortholog_one2one 2 retrogenes
retro_rnor_1164, retro_rnor_2160,
Sorex araneus ENSSARG00000008580 ortholog_one2one 2 retrogenes
retro_sara_216, retro_sara_78,
Sarcophilus harrisii ENSSHAG00000014504 ortholog_one2one 1 retrogene
retro_shar_734,
Tarsius syrichta ENSTSYG00000012423 ortholog_one2one 1 retrogene
retro_tsyr_244,
Tursiops truncatus ENSTTRG00000013796 ortholog_one2one 1 retrogene
retro_ttru_819,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_422 63.46 75.75
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2. retro_itri_696 89.34 100.00
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Download FASTA sequences of all ENSSTOG00000001407 retrocopies