RetrogeneDB ID: | retro_btau_1691 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:947636..948254(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB18 | ||
Ensembl ID: | ENSBTAG00000009871 | ||
Aliases: | None | ||
Description: | Ras-related protein Rab-18 [Source:UniProtKB/Swiss-Prot;Acc:Q0IIG8] |
Percent Identity: | 97.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF |
MDEDVLTTL.ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF | |
Retrocopy | MDEDVLTTLRILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF |
Parental | RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA |
RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA | |
Retrocopy | RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA |
Parental | RKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKLTHREEGQGGGACGGYCSVL |
.KHSMLFIE.SAKTCDGVQCAFEELVEKII.TPGLW.SENQNKGVKLTHREEGQGG.ACGGYCSVL | |
Retrocopy | GKHSMLFIEESAKTCDGVQCAFEELVEKII*TPGLWKSENQNKGVKLTHREEGQGGRACGGYCSVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 66 .91 RPM |
ERP005899_muscle | 0 .00 RPM | 47 .35 RPM |
SRP017611_brain | 0 .09 RPM | 79 .94 RPM |
SRP017611_kidney | 0 .06 RPM | 69 .05 RPM |
SRP017611_liver | 0 .08 RPM | 55 .27 RPM |
SRP030211_testis | 0 .07 RPM | 51 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009871 | 1 retrocopy |
retro_btau_1691 ,
|
Choloepus hoffmanni | ENSCHOG00000005565 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000002234 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000014338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008253 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022307 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028015 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018972 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007613 | 1 retrocopy |