RetrogeneDB ID: | retro_cpor_633 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:31543473..31543955(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000027355 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB18 | ||
Ensembl ID: | ENSCPOG00000002234 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.9 % |
Parental protein coverage: | 79.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VDFKVKTISVDGNKAKLAIWWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT |
.D.K.K..SVDGNKAKLAIW.DT.GQE.FRTLTPSYYRG.QGV.L..DVTRRDTFV.LDNWLNELE.Y.T | |
Retrocopy | IDLKGK-FSVDGNKAKLAIW-DTSGQEKFRTLTPSYYRGTQGVTLHDDVTRRDTFVQLDNWLNELEVYNT |
Parental | RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT-PGLWESEN |
RNDIVN.LVGNKIDKEN.E.D.NEGLKFA.KH.M..IE.....CDGVQC..E.L.EKI.QT..GLWESEN | |
Retrocopy | RNDIVNILVGNKIDKENHEADTNEGLKFAPKHFMFLIE--SRVCDGVQCVSEKLIEKITQT<AGLWESEN |
Parental | QNKGVKLSHMEESHGGGACGGYCSVL |
Q.KGVKLSHMEESH.G.ACG.YCS.L | |
Retrocopy | QDKGVKLSHMEESHRGRACGDYCSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 44 .39 RPM |
SRP017611_liver | 0 .00 RPM | 39 .00 RPM |
SRP040447_lung | 0 .00 RPM | 47 .77 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 25 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009871 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005565 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000002234 | 2 retrocopies |
retro_cpor_633 , retro_cpor_652,
|
Dipodomys ordii | ENSDORG00000014338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008253 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022307 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028015 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018972 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007613 | 1 retrocopy |