Parental gene: | RAB18, ENSCPOG00000002234 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_39:13261006..13298278(-) |
>ENSCPOG00000002234
ATGGACGAGGACGTGCTGACCACTCTGAAGATCCTTATCATCGGCGAGAGTGGGGTGGGCAAGTCCAGCCTGCTCTTGAG
GTTCACAGATGACACTTTTGATCCAGAACTTGCAGCCACGATAGGTGTTGACTTCAAAGTGAAAACAATTTCAGTGGATG
GAAATAAGGCTAAACTTGCAATATGGTGGGATACTGCTGGTCAAGAGAGGTTTCGAACATTAACTCCCAGCTACTATAGA
GGTGCACAGGGTGTTATATTAGTTTATGATGTCACAAGAAGAGACACCTTTGTTAAGCTGGATAATTGGTTGAATGAGTT
GGAAACATACTGTACAAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATCGATAAGGAAAATCGTGAAGTTGATA
GAAATGAAGGCCTGAAATTTGCACGAAAACATTCCATGTTATTTATAGAGGCAAGTGCAAAAACCTGTGATGGTGTACAA
TGTGCCTTTGAGGAACTTGTTGAAAAGATCATTCAGACCCCTGGACTGTGGGAGAGTGAGAACCAGAATAAAGGAGTCAA
ACTGTCACACATGGAAGAGAGCCACGGAGGAGGGGCCTGTGGTGGTTACTGTTCTGTGTTATAA
ATGGACGAGGACGTGCTGACCACTCTGAAGATCCTTATCATCGGCGAGAGTGGGGTGGGCAAGTCCAGCCTGCTCTTGAG
GTTCACAGATGACACTTTTGATCCAGAACTTGCAGCCACGATAGGTGTTGACTTCAAAGTGAAAACAATTTCAGTGGATG
GAAATAAGGCTAAACTTGCAATATGGTGGGATACTGCTGGTCAAGAGAGGTTTCGAACATTAACTCCCAGCTACTATAGA
GGTGCACAGGGTGTTATATTAGTTTATGATGTCACAAGAAGAGACACCTTTGTTAAGCTGGATAATTGGTTGAATGAGTT
GGAAACATACTGTACAAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATCGATAAGGAAAATCGTGAAGTTGATA
GAAATGAAGGCCTGAAATTTGCACGAAAACATTCCATGTTATTTATAGAGGCAAGTGCAAAAACCTGTGATGGTGTACAA
TGTGCCTTTGAGGAACTTGTTGAAAAGATCATTCAGACCCCTGGACTGTGGGAGAGTGAGAACCAGAATAAAGGAGTCAA
ACTGTCACACATGGAAGAGAGCCACGGAGGAGGGGCCTGTGGTGGTTACTGTTCTGTGTTATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 39 .00 RPM |
| SRP017611_kidney | 44 .39 RPM |
| SRP017611_brain | 43 .94 RPM |
| SRP040447_lung | 47 .77 RPM |
| SRP040447_skeletal_muscle | 25 .45 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000009871 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000005565 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000014338 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000008253 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000022307 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028015 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018972 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000007613 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_633 | 75.90 | 79.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_652 | 79.03 | 58.94 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000002234 retrocopies