RetrogeneDB ID: | retro_btau_473 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:56443649..56444759(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000020684 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1B | ||
Ensembl ID: | ENSBTAG00000046248 | ||
Aliases: | None | ||
Description: | Actin-related protein 2/3 complex subunit 1B [Source:UniProtKB/Swiss-Prot;Acc:Q58CQ2] |
Percent Identity: | 93.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC |
MAYHSFLVE.ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ.HELKEHN.QVTG.DWAP..NRIVTC | |
Retrocopy | MAYHSFLVESISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQEHELKEHNWQVTGTDWAPETNRIVTC |
Parental | GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP |
GTDRNA.VWTLKGRTWKPTLVILRINRAARCVRWAP.EKKFAVGSGS.VISICYFEQENDWWVCKHIKKP | |
Retrocopy | GTDRNANVWTLKGRTWKPTLVILRINRAARCVRWAPSEKKFAVGSGSPVISICYFEQENDWWVCKHIKKP |
Parental | IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF |
IRSTVLSLDWHPN.VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF | |
Retrocopy | IRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF |
Parental | SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS |
SANGSRVAWVSHDST.CL.DADKKMA..TLASETL.LLAVTFITE.SLVAAGHDCF.VLFTYDSA.GKLS | |
Retrocopy | SANGSRVAWVSHDSTLCLVDADKKMAFETLASETLLLLAVTFITENSLVAAGHDCFLVLFTYDSATGKLS |
Parental | FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM |
FGGRL..PKQ.SQ.GLT.RERFQNLDKKASSEGSAAAGAGLDSLHKNS.SQ.SVLSGGKAKCSQFCTTGM | |
Retrocopy | FGGRL--PKQRSQHGLTSRERFQNLDKKASSEGSAAAGAGLDSLHKNSISQTSVLSGGKAKCSQFCTTGM |
Parental | DGGMSIWDVRSLESALKDLKIV |
DGGMSIWDV.SLESALKDLKIV | |
Retrocopy | DGGMSIWDVKSLESALKDLKIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 11 .46 RPM |
ERP005899_muscle | 0 .00 RPM | 191 .04 RPM |
SRP017611_brain | 0 .09 RPM | 15 .71 RPM |
SRP017611_kidney | 0 .24 RPM | 59 .75 RPM |
SRP017611_liver | 0 .00 RPM | 37 .23 RPM |
SRP030211_testis | 0 .08 RPM | 20 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004242 | 1 retrocopy | |
Bos taurus | ENSBTAG00000046248 | 2 retrocopies |
retro_btau_1547, retro_btau_473 ,
|
Canis familiaris | ENSCAFG00000015081 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015849 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009924 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013186 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017424 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010933 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016522 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029622 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010872 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000991 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007625 | 1 retrocopy |