Parental gene: | ARPC1B, ENSBTAG00000046248 |
| Aliases: | None |
| Description: | Actin-related protein 2/3 complex subunit 1B [Source:UniProtKB/Swiss-Prot;Acc:Q58CQ2] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 25:37546484..37559078(-) |
>ENSBTAG00000046248
ATGGCCTATCACAGCTTCCTGGTGGAGCCCATCAGCTGCCACGCCTGGAACAAGGACCGCACCCAGATCGCTATCTGCCC
CAACAACCACGAGGTGCACATCTATGAGAAGAGCGGGAACAAGTGGGTCCAGGTGCACGAACTCAAGGAGCACAACGGGC
AGGTGACAGGCATTGACTGGGCCCCAGATAGTAACCGCATCGTGACCTGTGGCACAGACCGCAACGCCTACGTGTGGACG
CTGAAGGGCCGCACGTGGAAGCCCACGCTTGTCATCCTGCGCATCAACCGCGCCGCTCGCTGTGTGCGCTGGGCCCCCAA
TGAGAAAAAGTTCGCTGTGGGCAGTGGCTCCCGTGTCATCTCCATCTGCTATTTCGAGCAGGAAAATGACTGGTGGGTGT
GCAAGCACATCAAGAAGCCCATCCGCTCCACCGTCCTCAGCCTGGACTGGCACCCCAACAGCGTGCTCCTGGCCGCCGGC
TCCTGCGACTTCAAATGCCGGATCTTCTCAGCCTACATCAAGGAGGTGGAGGAGCGGCCAGCACCCACCCCGTGGGGCTC
CAAGATGCCGTTCGGGGAGCTGATGTTCGAGTCCAGCAGTAGCTGCGGCTGGGTGCATGGCGTCTGCTTCTCGGCCAACG
GCAGTCGTGTAGCCTGGGTCAGCCACGACAGCACCGTGTGCCTGGCTGATGCTGACAAGAAGATGGCCGTCGCGACTCTG
GCCTCTGAAACGCTGCCGCTGCTGGCCGTCACCTTCATCACGGAGAGCAGTCTGGTGGCAGCGGGCCACGACTGCTTCCC
GGTGCTCTTCACCTACGACAGCGCCGCGGGGAAGCTGAGCTTCGGTGGGCGGCTGGACGTGCCCAAGCAGAGCTCGCAGC
GCGGCCTCACGGCCCGCGAGCGCTTCCAGAACCTCGACAAGAAGGCGAGCTCTGAGGGCAGTGCGGCGGCGGGCGCCGGC
CTGGACTCGCTGCACAAGAACAGCGTCAGCCAGATCTCGGTGCTGAGTGGGGGAAAGGCCAAGTGCTCGCAGTTTTGCAC
CACCGGCATGGACGGCGGCATGAGCATCTGGGACGTGAGGAGCCTGGAGTCTGCCCTGAAGGACCTCAAGATTGTATGA
ATGGCCTATCACAGCTTCCTGGTGGAGCCCATCAGCTGCCACGCCTGGAACAAGGACCGCACCCAGATCGCTATCTGCCC
CAACAACCACGAGGTGCACATCTATGAGAAGAGCGGGAACAAGTGGGTCCAGGTGCACGAACTCAAGGAGCACAACGGGC
AGGTGACAGGCATTGACTGGGCCCCAGATAGTAACCGCATCGTGACCTGTGGCACAGACCGCAACGCCTACGTGTGGACG
CTGAAGGGCCGCACGTGGAAGCCCACGCTTGTCATCCTGCGCATCAACCGCGCCGCTCGCTGTGTGCGCTGGGCCCCCAA
TGAGAAAAAGTTCGCTGTGGGCAGTGGCTCCCGTGTCATCTCCATCTGCTATTTCGAGCAGGAAAATGACTGGTGGGTGT
GCAAGCACATCAAGAAGCCCATCCGCTCCACCGTCCTCAGCCTGGACTGGCACCCCAACAGCGTGCTCCTGGCCGCCGGC
TCCTGCGACTTCAAATGCCGGATCTTCTCAGCCTACATCAAGGAGGTGGAGGAGCGGCCAGCACCCACCCCGTGGGGCTC
CAAGATGCCGTTCGGGGAGCTGATGTTCGAGTCCAGCAGTAGCTGCGGCTGGGTGCATGGCGTCTGCTTCTCGGCCAACG
GCAGTCGTGTAGCCTGGGTCAGCCACGACAGCACCGTGTGCCTGGCTGATGCTGACAAGAAGATGGCCGTCGCGACTCTG
GCCTCTGAAACGCTGCCGCTGCTGGCCGTCACCTTCATCACGGAGAGCAGTCTGGTGGCAGCGGGCCACGACTGCTTCCC
GGTGCTCTTCACCTACGACAGCGCCGCGGGGAAGCTGAGCTTCGGTGGGCGGCTGGACGTGCCCAAGCAGAGCTCGCAGC
GCGGCCTCACGGCCCGCGAGCGCTTCCAGAACCTCGACAAGAAGGCGAGCTCTGAGGGCAGTGCGGCGGCGGGCGCCGGC
CTGGACTCGCTGCACAAGAACAGCGTCAGCCAGATCTCGGTGCTGAGTGGGGGAAAGGCCAAGTGCTCGCAGTTTTGCAC
CACCGGCATGGACGGCGGCATGAGCATCTGGGACGTGAGGAGCCTGGAGTCTGCCCTGAAGGACCTCAAGATTGTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 15 .71 RPM |
| SRP017611_kidney | 59 .75 RPM |
| SRP017611_liver | 37 .23 RPM |
| ERP005899_muscle | 191 .04 RPM |
| ERP005899_liver | 11 .46 RPM |
| SRP030211_testis | 20 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004242 | within_species_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000015081 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015849 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000009924 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013186 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000017424 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010933 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000016522 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000029622 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010872 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000991 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000007625 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_473 | 93.01 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1547 | 58.76 | 51.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000046248 retrocopies