RetrogeneDB ID: | retro_sscr_374 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:81047630..81048292(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1B | ||
Ensembl ID: | ENSSSCG00000007625 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1B, 41kDa [Source:HGNC Symbol;Acc:704] |
Percent Identity: | 62.67 % |
Parental protein coverage: | 85.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTL-KGRTWKPTL |
.IA..PNNHEVHI..K.G..W...H.LKEHNG...G.DWA..S.RIVTCG.DRN.Y.W...K...WKP.. | |
Retrocopy | QIAPSPNNHEVHIDKKNGS*WIKAH*LKEHNGHIAGVDWASKSDRIVTCGADRNTYAWSR>KDGVWKPMR |
Parental | VILRINRAARCVRWAPQENKFAVGSG-SRVISICYFEQENDWWVCKHIKKPIRSTV-LSLDWHPNNVLLA |
VILRINRAA..V.W.P.E.KFAVGSG.S.....C..E.EN.W.V.KHIKKPI.STV.LSLDWHPNN.LL. | |
Retrocopy | VILRINRAATFVKWSPLESKFAVGSG<SMTFVCC-LESENGW*VSKHIKKPICSTVLLSLDWHPNNALLE |
Parental | AGSCDFKCRIFSAYIKEVEE-RPAPTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDST |
AGSCDFKCR.F.AYIKEV.E..PA.T.WGSKMPFG.LM..F..S...GWVH...F.ASGSR.AW.SHDST | |
Retrocopy | AGSCDFKCRVFLAYIKEVDE<KPANTHWGSKMPFGQLMSEFGGSGTGGWVHRDSFPASGSRLAWISHDST |
Parental | VCLADADKKMAVATL |
...A.A.K......L | |
Retrocopy | MRAAHATKSVQISIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 205 .87 RPM |
SRP014902_testis | 0 .00 RPM | 48 .09 RPM |
SRP018288_heart | 0 .00 RPM | 13 .02 RPM |
SRP018288_kidney | 0 .00 RPM | 23 .74 RPM |
SRP018288_liver | 0 .00 RPM | 17 .59 RPM |
SRP018288_lung | 0 .00 RPM | 145 .71 RPM |
SRP018856_adipose | 0 .00 RPM | 95 .15 RPM |
SRP035408_brain | 0 .00 RPM | 2 .86 RPM |
SRP035408_liver | 0 .00 RPM | 8 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046248 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015081 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015849 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009924 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013186 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017424 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010933 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016522 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029622 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010872 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000991 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007609 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007625 | 1 retrocopy |
retro_sscr_374 ,
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