RetrogeneDB ID: retro_mputfur_1578

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897273.1:314254..315358(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000010760
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ARPC1B
• Ensembl ID: ENSMPUG00000016522
• Aliases: None
• Description: actin related protein 2/3 complex, subunit 1B, 41kDa [Source:HGNC Symbol;Acc:704]

Sequence

>retro_mputfur_1578
ATGTCCCTACATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACCCAGATTGCTCTTAGCCC
CAACACTCACGAAGTCCACATCTATAAGAAGAACAGGAGCCAGTGGGTGAAAGCTCATGAGCTCAAGGAGAATAACGGAC
ACATTACAGGTATCGACTGGGCTCCCAAGAGTGACCACATCGTCACTTGTGGGGCAGACCGCAATGCCTACGTCTGGAGT
CAGAAAGATGGTGTCTGGAAGCCAACCCTGGTGATCCTGAGAATTAATCGTGCAGCGACTTTTGTCAAGTGGTCCCTGCT
AGAGAACAAATTTGCTGTGGGAAGTGGAGCACGACTCATTTCTGTTACTTTGAGTCTGAAAATGACTGGTGGGTAAGCAA
GCACATTAAGAAGCCGATTCGCTTCCACGGTCCTCAGCTTGGATTGGCATCCCAACAATGTCTTGCTGGCAGCAGGATCC
TGTGATTTCAAATGCAGAGTGTTTTCTGCCTACATTAAAGAAGTGGATGAAAAGCCAGCCAGTACACCCTGGGGCAGCAA
GATGCCTTTTGGTCAGCTGATGTCAGAGTTCGGGGGCAGTGGCACCGGCGGCTGGGTGCATGGGGTCAGCTTCTCTGCCA
GCGGGAGTCGCCTGGCCTGCGTCAGCCACGACAGCACCGTATCAGTTGCTGACGCCTCAAAAAGCCTGCAGGTCTCAACT
CTGAAAACAGAGTTCCTGCCCCTCCTGAGTGTGTCATTTGTCTCAGAGAATAGCGTTGTAGCCGCGGGCCATGACTGCTG
CCCAATGCTCTTTAACTACGATGACCGTGGCTGCTTGACCTTTGTCTCCAAACTAGACATTCCAAAACAGAGCATTCAGC
GCAACATGTCTGCTATGGAACGCTTCCGCAACATGGACAAGAGGGCCACGACTGAGGACCGCAACACAGCCTTGGAGACG
CGGCACCAGAATAGCATCACTCAAGTGTCTATTTATGAAGTGGACAAGCAAGATTATCGCAAATTTTACAATACTGGCAT
CGATGGAGCCATGACAATTTGGGATTTCAAGACCTTAGAGTCTTCCATCCAGGGCCTCCGGATA

Alignment

ORF - retro_mputfur_1578 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.67 %
• Parental protein coverage: 99.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWVKVHELKEHNGQVTGIDWAPESNRIVTC
          M..H.FL.EPI.CHAWN.DRTQIA..PN.HEVHIY.K....WVK.HELKE.NG..TGIDWAP.S..IVTC
Retrocopy MSLHQFLLEPITCHAWNRDRTQIALSPNTHEVHIYKKNRSQWVKAHELKENNGHITGIDWAPKSDHIVTC

Parental  GTDRNAYVWTLKGHTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISIC-YFEQENDWWVCKHIKK
          G.DRNAYVW..K...WKPTLVILRINRAA..V.W...ENKFAVGSG.R.IS..........W.V.KHIKK
Retrocopy GADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSLLENKFAVGSGARLISVT<FESENDWW-VSKHIKK

Parental  PIR-STVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM--FESSSSCGWVH
          PIR.STVLSLDWHPNNVLLAAGSCDFKCR.FSAYIKEV.E.PA.TPWGSKMPFG.LM..F..S...GWVH
Retrocopy PIR>STVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVH

Parental  GVCFSASGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDGTT
          GV.FSASGSR.A.VSHDSTV..ADA.K...V.TL..E.LPLL...F...NS.VAAGHDC.P.LF.YD...
Retrocopy GVSFSASGSRLACVSHDSTVSVADASKSLQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYD-DR

Parental  GTLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSDGSVASGAGLDSLHKNSVSQISVLSGGKAKCSQFC
          G.L.F...LD.PKQS.QR...A.ERF.N.DK.A...........L...H.NS..Q.S.....K.....F.
Retrocopy GCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTED---RNTALETRHQNSITQVSIYEVDKQDYRKFY

Parental  TTGMDGGMSIWDVKSLESALKDLKI
          .TG.DG.M.IWD.K.LES....L.I
Retrocopy NTGIDGAMTIWDFKTLESSIQGLRI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1578 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1578 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000046248	2 retrocopies	retro_btau_1547, retro_btau_473,
Canis familiaris	ENSCAFG00000015081	1 retrocopy	retro_cfam_1568,
Callithrix jacchus	ENSCJAG00000015849	1 retrocopy	retro_cjac_2365,
Echinops telfairi	ENSETEG00000009924	2 retrocopies	retro_etel_1076, retro_etel_1275,
Gorilla gorilla	ENSGGOG00000013186	2 retrocopies	retro_ggor_1337, retro_ggor_1455,
Microcebus murinus	ENSMICG00000017424	1 retrocopy	retro_mmur_602,
Myotis lucifugus	ENSMLUG00000010933	1 retrocopy	retro_mluc_974,
Mustela putorius furo	ENSMPUG00000016522	1 retrocopy	retro_mputfur_1578 ,
Mus musculus	ENSMUSG00000029622	2 retrocopies	retro_mmus_1340, retro_mmus_3623,
Otolemur garnettii	ENSOGAG00000010872	2 retrocopies	retro_ogar_2380, retro_ogar_3087,
Rattus norvegicus	ENSRNOG00000000991	2 retrocopies	retro_rnor_1105, retro_rnor_967,
Sus scrofa	ENSSSCG00000007625	1 retrocopy	retro_sscr_374,