RetrogeneDB ID: | retro_btau_691 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:21610173..21610383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UQCRH | ||
Ensembl ID: | ENSBTAG00000009603 | ||
Aliases: | None | ||
Description: | Cytochrome b-c1 complex subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P00126] |
Percent Identity: | 54.29 % |
Parental protein coverage: | 74.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GLEDEQRMLTGSGDPKEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQ--TEEDCTE |
G.E.....LTGSGDP............PLT.VR.Q.EQLEKCVKA.E.LEL.DERV.SR.Q......CTE | |
Retrocopy | GCEKDADLLTGSGDPXXXXXXXXXXXXPLTAVRGQGEQLEKCVKAHEQLEL*DERVASRLQRSSSTSCTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 40 .73 RPM |
ERP005899_muscle | 0 .05 RPM | 149 .71 RPM |
SRP017611_brain | 0 .00 RPM | 52 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 75 .87 RPM |
SRP017611_liver | 0 .00 RPM | 21 .29 RPM |
SRP030211_testis | 0 .03 RPM | 34 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009603 | 3 retrocopies |
retro_btau_1247, retro_btau_691 , retro_btau_732,
|
Callithrix jacchus | ENSCJAG00000021126 | 5 retrocopies | |
Homo sapiens | ENSG00000173660 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010631 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006850 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063882 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016523 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007600 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001134 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000016059 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025831 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000000691 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000012550 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006763 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011608 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006572 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006326 | 1 retrocopy |