RetrogeneDB ID: | retro_mmus_1426 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:99898289..99898556(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000037438 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uqcrh | ||
Ensembl ID: | ENSMUSG00000063882 | ||
Aliases: | Uqcrh, 2210416J04Rik, 2310021J10Rik, 2610041P16Rik | ||
Description: | ubiquinol-cytochrome c reductase hinge protein [Source:MGI Symbol;Acc:MGI:1913826] |
Percent Identity: | 89.89 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGLEDERKMLTGSGDPK-EEEEEELVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEEL |
MGL..ER.MLTGSGDPK.EEEEEELVDPLTTVREHCEQLEKCVKARERLELCD.RVSSRSQ.EE.CTEE. | |
Retrocopy | MGLANERMMLTGSGDPKEEEEEEELVDPLTTVREHCEQLEKCVKARERLELCDKRVSSRSQSEEGCTEER |
Parental | FDFLHARDHCVAHKLFKNL |
FDFLHARDHCVAHKLFK.L | |
Retrocopy | FDFLHARDHCVAHKLFKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 100 .67 RPM |
SRP007412_cerebellum | 0 .17 RPM | 77 .16 RPM |
SRP007412_heart | 0 .47 RPM | 262 .86 RPM |
SRP007412_kidney | 0 .44 RPM | 180 .12 RPM |
SRP007412_liver | 0 .30 RPM | 87 .74 RPM |
SRP007412_testis | 0 .14 RPM | 33 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009603 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000021126 | 5 retrocopies | |
Homo sapiens | ENSG00000173660 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010631 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006850 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063882 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016523 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007600 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001134 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000016059 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025831 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000000691 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000012550 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006763 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011608 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006572 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006326 | 1 retrocopy |