RetrogeneDB ID:

retro_nleu_2212

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397335.1:1683169..1683438(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UQCRH
Ensembl ID:ENSNLEG00000016523
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2212
GGACTGGAGGATGAGCAAAAGATGCTGAGCAGGTCCTGAGATCCTAAGAAGGAGGAAGAGGAAGAGGAGGAATGAATGAA
TCCCCTAACAACAGTGAGACAGCAATGAGAGCAGTTGGAGAAATGTGTAAAGGCCTGGAAGCAGCTAGAGCTCTGTGACA
AGCGTGTATCCTCTCAATCACATACAGAAGAGGATTGCAAGAGGAGCTCTTTGACTTCTTGCATGCAAGGGACCATTGCT
TTGCCCACAAACTCCTTAACAACTTGAAA

ORF - retro_nleu_2212 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.02 %
Parental protein coverage: 98.9 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDC-TEE
GLEDEQKML..S.DP..EEEEEEE...PLTTVR.Q.EQLEKCVKA...LELCD.RVSS.S.TEEDC..EE
RetrocopyGLEDEQKMLSRS*DPKKEEEEEEE*MNPLTTVRQQ*EQLEKCVKAWKQLELCDKRVSSQSHTEEDC<QEE
ParentalLFDFLHARDHCVAHKLFNNLK
LFDFLHARDHC.AHKL.NNLK
RetrocopyLFDFLHARDHCFAHKLLNNLK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2212 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 42 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000096033 retrocopies
Callithrix jacchus ENSCJAG000000211265 retrocopies
Homo sapiens ENSG000001736605 retrocopies
Gorilla gorilla ENSGGOG000000106311 retrocopy
Macropus eugenii ENSMEUG000000068501 retrocopy
Mus musculus ENSMUSG000000638824 retrocopies
Nomascus leucogenys ENSNLEG00000016523 4 retrocopies
Oryctolagus cuniculus ENSOCUG000000076001 retrocopy
Otolemur garnettii ENSOGAG000000011342 retrocopies
Ochotona princeps ENSOPRG000000160591 retrocopy
Pongo abelii ENSPPYG000000258314 retrocopies
Pan troglodytes ENSPTRG000000006914 retrocopies
Rattus norvegicus ENSRNOG000000125501 retrocopy
Sorex araneus ENSSARG000000067631 retrocopy
Tupaia belangeri ENSTBEG000000116082 retrocopies
Tarsius syrichta ENSTSYG000000065722 retrocopies
Tursiops truncatus ENSTTRG000000063261 retrocopy



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