RetrogeneDB ID: | retro_hsap_564 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:44227781..44228054(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224162 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UQCRH | ||
Ensembl ID: | ENSG00000173660 | ||
Aliases: | UQCRH, QCR6, UQCR8 | ||
Description: | ubiquinol-cytochrome c reductase hinge protein [Source:HGNC Symbol;Acc:12590] |
Percent Identity: | 82.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERV-SSRSHTEEDCT- |
MGLEDEQKML..S.DP.EEEEEEEE.V.PLTTVR.QCEQLEKCVKA...LELCD.RV.SSRSHTEEDC.. | |
Retrocopy | MGLEDEQKMLSRS*DPKEEEEEEEE*VNPLTTVR*QCEQLEKCVKAWKQLELCDKRV>SSRSHTEEDCK< |
Parental | EELFDFLHARDHCVAHKLFNNLK |
EELFDFLHARDHC.AHKL.NNLK | |
Retrocopy | EELFDFLHARDHCFAHKLLNNLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 56 .91 RPM |
bodymap2_adrenal | 0 .00 RPM | 78 .46 RPM |
bodymap2_brain | 0 .00 RPM | 97 .00 RPM |
bodymap2_breast | 0 .00 RPM | 96 .81 RPM |
bodymap2_colon | 0 .00 RPM | 107 .60 RPM |
bodymap2_heart | 0 .00 RPM | 255 .57 RPM |
bodymap2_kidney | 0 .00 RPM | 92 .61 RPM |
bodymap2_liver | 0 .00 RPM | 50 .44 RPM |
bodymap2_lung | 0 .00 RPM | 67 .60 RPM |
bodymap2_lymph_node | 0 .00 RPM | 88 .10 RPM |
bodymap2_ovary | 0 .00 RPM | 62 .03 RPM |
bodymap2_prostate | 0 .00 RPM | 103 .11 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 57 .95 RPM |
bodymap2_testis | 0 .00 RPM | 64 .82 RPM |
bodymap2_thyroid | 0 .00 RPM | 65 .29 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 65 .36 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_4796 | 1752 libraries | 75 libraries | 0 libraries | 1 library | 1 library |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_422 |
Pongo abelii | retro_pabe_516 |
Callithrix jacchus | retro_cjac_962 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009603 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000021126 | 5 retrocopies | |
Homo sapiens | ENSG00000173660 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010631 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006850 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063882 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016523 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007600 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001134 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000016059 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025831 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000000691 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000012550 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006763 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011608 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006572 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006326 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |