RetrogeneDB ID: | retro_btau_850 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:4175798..4176363(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2B | ||
Ensembl ID: | ENSBTAG00000001697 | ||
Aliases: | TRA2B, SFRS10 | ||
Description: | Transformer-2 protein homolog beta [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBT6] |
Percent Identity: | 63.45 % |
Parental protein coverage: | 65.62 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 8 |
Parental | RSRSESRSRSRR-SSRRHYTRSRSRSRSHRRSRSRS-YSRDYRRRHSHSHSP-MSTRRRHVGNRANPDPN |
RS.....SR.R.....R..TR.RS..RSHR.S.S...Y.RD..R.HSHSH.P..ST.R.HVGN.A.PDP. | |
Retrocopy | RS*MTAASRARS>DTQRRHTRPRSHTRSHRHSPSGF<YGRD*GRWHSHSHPP<RSTHRGHVGNPASPDPI |
Parental | CCLGVF-GLSLYTTERDL-REVFSKYGPIADVSIVYDQQSRRSR-GFAFVYFENVDDAKEAKERANGMEL |
CCLGV..GL.LYTTERDL..EVFSK.G.I.D...V.D.QSR.S..GFA.VYFE.VDDAKEA...ANGMEL | |
Retrocopy | CCLGVL<GLCLYTTERDL<KEVFSKHGLIPDGFVVCDEQSRCSI>GFACVYFEKVDDAKEATKHANGMEL |
Parental | DGRRIRVDFSITKRPHT-PTPGIYMGRP-TYGSSRRRDYYDRGYDRGYDDRDYYSRS |
.G.RI.VDFSITKRPHT..TPGIYMGRP...GSS....Y..RG.D.G.DDRDYYSR. | |
Retrocopy | GGHRITVDFSITKRPHT<STPGIYMGRP>PVGSSSSWYYCGRG*DGGSDDRDYYSRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 81 .25 RPM |
ERP005899_muscle | 0 .00 RPM | 87 .15 RPM |
SRP017611_brain | 0 .00 RPM | 42 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .70 RPM |
SRP017611_liver | 0 .00 RPM | 40 .70 RPM |
SRP030211_testis | 0 .02 RPM | 123 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001697 | 2 retrocopies |
retro_btau_1245, retro_btau_850 ,
|
Bos taurus | ENSBTAG00000013308 | 1 retrocopy | |
Bos taurus | ENSBTAG00000025848 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005781 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003157 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022858 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |