RetrogeneDB ID: retro_mputfur_673

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896933.1:7873149..7873981(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TRA2B
• Ensembl ID: ENSMPUG00000003157
• Aliases: None
• Description: transformer 2 beta homolog (Drosophila) [Source:HGNC Symbol;Acc:10781]

Sequence

>retro_mputfur_673
ATGAGCGACAGCAGCTAGCAGAACTACAGTGAGGGGAATCCTGTTCTGCTTCCAGAGGTGGAAGTGCTCATGGATCTGGG
AAATCTGCAAGGCATACCCCAGCAAGGTCTCGCTCCAAGGCAGATTCCAGGCATTCCAGATCTGAATCTTGGTTTAGATC
CAGACGAAGAAGTTCTCGAAGGCATTACACAAGATCAAGATCTTGGTCTCGCTCCCATAGACGACAGCAGGTCTTACAAT
TGAGATTATCGAAGACGGCCTAGCCACCGTCACTCTTCCATGTCCACTCGCAGGCATCATGTTGGGAATTGGGCAAATCC
TGATCCAACTGCTGTCTTGGAGTATTTGGATTGAGCTTGTACACTACAGAAAGAGATCTAAGAGAAGTATTCTCTAAATA
TGGCCCCATTGCTGATGTGTCCATTGTATAAGACCAGCAGTCTAGACGTTCAAGAGGATTTGCCTTTGTGCATTCTGAAA
ATGTAGATGATGCCAAGGAAGCAAAAGAGCGTGCCAATGGAATGGAACTTGATGGATGTGGGATCAGAGTTTATTTCTCT
ATAACAAAAAGACCACATACCCCGACACCAGGGATTTACATGGGGAGACCTAGCTATGGCAGTTCACACCGTCAGGATTA
CTATGACAGGATAGGATCGAGACTATGATGAGTGAGACTACTACAGCAAATCACACGGAGGAGGAGGAGGAGGATGGACT
GCTGCTCAAGATAGGGATCAGATTTACCGAAAGGTGGTTACCTTCTCCTTACTGTAGTCATGGAGGATACAGATCACATT
CTAGATCTCAATCATACTCACCTCATCGCTAT

Alignment

ORF - retro_mputfur_673 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.47 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 5
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MSDSGEQNYGER-ESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT
          MSDS..QNY.E..ES.SASR.GSAHGSGKSARHTPARSRSK.DSR.....SRS.S..RSR.RRSSRRHYT
Retrocopy MSDSS*QNYSEG<ESCSASRGGSAHGSGKSARHTPARSRSKADSRH----SRSESWFRSR-RRSSRRHYT

Parental  RSRSRSRSHRRSR-SRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDP-NCCLGVFGLSLYTTERDLREV
          RS..RS.S....R.SRSY..DYRRR.SH.HS.MSTRR.HVGN.ANPDP.NCCLGVFGLSLYTTERDLREV
Retrocopy RS--RSWSRSHRR>SRSYN*DYRRRPSHRHSSMSTRRHHVGNWANPDP<NCCLGVFGLSLYTTERDLREV

Parental  FSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIY
          FSKYGPIADVSIV.DQQSRRSRGFAFV..ENVDDAKEAKERANGMELDG..IRV.FSITKRPHTPTPGIY
Retrocopy FSKYGPIADVSIV*DQQSRRSRGFAFVHSENVDDAKEAKERANGMELDGCGIRVYFSITKRPHTPTPGIY

Parental  MGRPTYGSSRRRDYYD-RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYR-RRSPSPYYSRGGYR
          MGRP.YG.S..R..Y...G.DR.YD..DYYS.S....GGGGGGW.AAQDRDQIYR.R..PSPY.S.GGYR
Retrocopy MGRPSYG-SSHRQDYY>TG*DRDYDE*DYYSKSH---GGGGGGWTAAQDRDQIYR>RWLPSPYCSHGGYR

Parental  SRSRSRSYSPRRY
          S.SRS.SYSP.RY
Retrocopy SHSRSQSYSPHRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_673 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_673 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001697	2 retrocopies	retro_btau_1245, retro_btau_850,
Myotis lucifugus	ENSMLUG00000005781	2 retrocopies	retro_mluc_2565, retro_mluc_2567,
Mustela putorius furo	ENSMPUG00000001855	2 retrocopies	retro_mputfur_1539, retro_mputfur_956,
Mustela putorius furo	ENSMPUG00000003157	1 retrocopy	retro_mputfur_673 ,
Mustela putorius furo	ENSMPUG00000013480	1 retrocopy	retro_mputfur_1442,
Mus musculus	ENSMUSG00000022858	6 retrocopies	retro_mmus_1187, retro_mmus_2253, retro_mmus_2313, retro_mmus_3139, retro_mmus_3617, retro_mmus_756,
Ochotona princeps	ENSOPRG00000007990	2 retrocopies	retro_opri_24, retro_opri_930,
Rattus norvegicus	ENSRNOG00000001783	4 retrocopies	retro_rnor_1130, retro_rnor_1915, retro_rnor_2156, retro_rnor_2807,
Tarsius syrichta	ENSTSYG00000000388	1 retrocopy	retro_tsyr_1632,