RetrogeneDB ID: | retro_mmus_1187 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:30804378..30804962(+) | ||
Located in intron of: | ENSMUSG00000006527 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081850 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tra2b | ||
Ensembl ID: | ENSMUSG00000022858 | ||
Aliases: | None | ||
Description: | transformer 2 beta homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:106016] |
Percent Identity: | 77.72 % |
Parental protein coverage: | 68.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | NYGERESRSASRSGSAHGSGKSARHTPAR-SRSK-EDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRS |
.YGE.E..SAS.SGSAHGSGKSA.HTPAR.S.SK......SRS.S....ESRSRSRRSSRR...RS...S | |
Retrocopy | DYGEWEPCSASQSGSAHGSGKSAWHTPAR>SHSK>RSRSKSRSRS----ESRSRSRRSSRR--SRSPPGS |
Parental | RSHRRSRSRSYSRDYRRR--HSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP |
R.HR.S.SRSYS.D..RR..HSHSHSPMS.RR.HVGNRANPD.NCCLGVFGLSLYTTERDLREVFSKYGP | |
Retrocopy | R*HR*SWSRSYSQDDHRRHNHSHSHSPMSARRCHVGNRANPDCNCCLGVFGLSLYTTERDLREVFSKYGP |
Parental | IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG |
IAD.SI.YDQQSRRSRGFAFVYFENVD.AKEAKERA.GM.LDGR.IRV.FS..KRPHTPTPG | |
Retrocopy | IADLSIEYDQQSRRSRGFAFVYFENVDEAKEAKERASGMDLDGR*IRVAFSLSKRPHTPTPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 36 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .08 RPM |
SRP007412_heart | 0 .03 RPM | 31 .25 RPM |
SRP007412_kidney | 0 .02 RPM | 45 .26 RPM |
SRP007412_liver | 0 .05 RPM | 29 .14 RPM |
SRP007412_testis | 0 .32 RPM | 82 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001697 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005781 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003157 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022858 | 6 retrocopies |
retro_mmus_1187 , retro_mmus_2253, retro_mmus_2313, retro_mmus_3139, retro_mmus_3617, retro_mmus_756,
|
Mus musculus | ENSMUSG00000031134 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031167 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |