RetrogeneDB ID: | retro_mmus_3617 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:56155530..56156393(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082253 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tra2b | ||
Ensembl ID: | ENSMUSG00000022858 | ||
Aliases: | None | ||
Description: | transformer 2 beta homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:106016] |
Percent Identity: | 94.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR |
MS.SG.QNYGERES..ASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR | |
Retrocopy | MSASGKQNYGERESHFASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR |
Parental | SRSRSRSHRRS-RSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFS |
S.S.SRSHRRS.RSRSYSRD.RRRHSHSHSPMST.RRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFS | |
Retrocopy | SGS*SRSHRRS<RSRSYSRDCRRRHSHSHSPMSTGRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFS |
Parental | KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG |
KYGPIADVSIVYDQQSR.SRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG | |
Retrocopy | KYGPIADVSIVYDQQSRYSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG |
Parental | RPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSR |
R.TYGSSRRRDYYDRGYDR.YD.R.YYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYS.GGYRSRSR | |
Retrocopy | RATYGSSRRRDYYDRGYDREYDGRGYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSCGGYRSRSR |
Parental | SRSYSPRRY |
SRSYSPR.Y | |
Retrocopy | SRSYSPRCY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .47 RPM |
SRP007412_cerebellum | 0 .04 RPM | 41 .08 RPM |
SRP007412_heart | 0 .03 RPM | 31 .25 RPM |
SRP007412_kidney | 0 .08 RPM | 45 .26 RPM |
SRP007412_liver | 0 .03 RPM | 29 .14 RPM |
SRP007412_testis | 0 .27 RPM | 82 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001697 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005781 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003157 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022858 | 6 retrocopies |
retro_mmus_1187, retro_mmus_2253, retro_mmus_2313, retro_mmus_3139, retro_mmus_3617 , retro_mmus_756,
|
Mus musculus | ENSMUSG00000031134 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031167 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |