RetrogeneDB ID: retro_mluc_2567

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431013:17058..17908(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030640
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TRA2B
• Ensembl ID: ENSMLUG00000005781
• Aliases: None
• Description: None

Sequence

>retro_mluc_2567
GAGCGGGAATCCCGTTCTGCTTCCAGAAGTGGAAGTGCTCGTGGATCTGGGACATCTGCGAGGCATACCCCTGCAAGGTC
TCGCTCCAAGGAAGATTCCAGGCGGCGTTCCAGATCAAAGTCCAGGTCCAGATCTGAATCTAGGTCTAGATCCAGAAGAA
GTTCTCGAAGGCGTGATTATACAAGATCACGATCTCGGTCTCGCTCCCCTAGACGATCCCGTAGCAGGTCTGGCAGTCGA
GACTATCGGAGGCGTCACAGCCACGGTCATTCTCCCATGTCTACCCGGCAGACGTCATGTCGGGAATCGGGCCAATCCTG
CTCCCAACTGTTGTCTTGGAGCCTTTGGATTGAGCTTGTACACGACAGAAAGAGATCTCAGAGAAGTCTTCTCTAAATAT
GGCCCCCTTGCTGATGTGACTGTCGTCTATGACCAGCAATCTAGATGTTCAAGAGGATTTGCCTTCGTGTATTTTGAAAA
TGTAGATGATGCCAAGGAAGCAAGAGAGCGGGCCAATGGAATGGAGCTTGATGGACGTAGAATCAGAGTTGATTTCTCCA
TAACAAAAAGACCACATTCCCCCACACCAGGAATTTATATGGGGAGATCTACCTATGGCAGCTCGCGCCGTCGTGATTAC
TACGACAGAGGATACGGTAGAGGCTATGATGATCGGGACTACTACAGCAGATCATACAGAAGTGGTGGTGGTGGTGGAGG
TGGAGGAGGATGGAGAGCTGGACAAGACAGGGGTCAGATTTACAGAAGGCGGTCACCTTCTCCTTACTATAGTCGTGGAG
GAGGATATAGATCACGTTCCAGATCGCAATCACACTCACCTCGTCGCTAT

Alignment

ORF - retro_mluc_2567 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.17 %
• Parental protein coverage: 96.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EKESRSASRSGSAHGSGKSARHTPARSRSKEDS-RRSRSKSRSRSESRSRSRRSSRRH-YTRSRSRSRSH
          E.ESRSASRSGSA.GSG.SARHTPARSRSKEDS.RR...............RRSSRR..YTRSRSRSRS.
Retrocopy ERESRSASRSGSARGSGTSARHTPARSRSKEDSRRRXXXXXXXXXXXXXXXRRSSRRRDYTRSRSRSRSP

Parental  RRSRSRSYSRDYRRRHSHSHSPMSTR-RRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV
          RRSRSRS.SRDYRRRHSH.HSPMSTR.RRHVGNRANP.PNCCLG.FGLSLYTTERDLREVFSKYGP.ADV
Retrocopy RRSRSRSGSRDYRRRHSHGHSPMSTR>RRHVGNRANPAPNCCLGAFGLSLYTTERDLREVFSKYGPLADV

Parental  SIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSR
          ..VYDQQSR.SRGFAFVYFENVDDAKEA.ERANGMELDGRRIRVDFSITKRPH.PTPGIYMGR.TYGSSR
Retrocopy TVVYDQQSRCSRGFAFVYFENVDDAKEARERANGMELDGRRIRVDFSITKRPHSPTPGIYMGRSTYGSSR

Parental  RRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSP--YYSR-GGYRSRSRSRSYS
          RRDYYDRGY.RGYDDRDYYSRSYR...............D.....R..SP..YYSR.GGYRSRSRS.S.S
Retrocopy RRDYYDRGYGRGYDDRDYYSRSYRXXXXXXXXXXWRAGQDRGQIYRRRSPSPYYSRGGGYRSRSRSQSHS

Parental  PRRY
          PRRY
Retrocopy PRRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2567 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001697	2 retrocopies	retro_btau_1245, retro_btau_850,
Myotis lucifugus	ENSMLUG00000003996	1 retrocopy	retro_mluc_1013,
Myotis lucifugus	ENSMLUG00000005781	2 retrocopies	retro_mluc_2565, retro_mluc_2567 ,
Myotis lucifugus	ENSMLUG00000013209	5 retrocopies	retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Myotis lucifugus	ENSMLUG00000015007	1 retrocopy	retro_mluc_1975,
Mustela putorius furo	ENSMPUG00000003157	1 retrocopy	retro_mputfur_673,
Mus musculus	ENSMUSG00000022858	6 retrocopies	retro_mmus_1187, retro_mmus_2253, retro_mmus_2313, retro_mmus_3139, retro_mmus_3617, retro_mmus_756,
Ochotona princeps	ENSOPRG00000007990	2 retrocopies	retro_opri_24, retro_opri_930,
Rattus norvegicus	ENSRNOG00000001783	4 retrocopies	retro_rnor_1130, retro_rnor_1915, retro_rnor_2156, retro_rnor_2807,
Tarsius syrichta	ENSTSYG00000000388	1 retrocopy	retro_tsyr_1632,