RetrogeneDB ID: | retro_cfam_1038 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:40889382..40889993(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP2 | ||
Ensembl ID: | ENSCAFG00000004946 | ||
Aliases: | None | ||
Description: | WW domain binding protein 2 [Source:HGNC Symbol;Acc:12738] |
Percent Identity: | 57.82 % |
Parental protein coverage: | 77.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | NTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRV-IFLSKG-KDAMQSFMMPF-YLMKDCEIK |
.T..ILMSYD..E..F.D.KN.PEAFKGTKKG.VY.TPY...IFLSKG.KDA.QSFMMPF.YL.KDC.IK | |
Retrocopy | STILILMSYDYTEFVFKDVKNIPEAFKGTKKGNVYFTPYQF>IFLSKG<KDAIQSFMMPF<YLIKDCKIK |
Parental | QPVFGANYIK-GTVKAEAGGGWEGAASYKLTFTAGGAIEFGQR-MLQVASQASRGEAPNGAYGYSYTPSG |
QPVFG.NY.K...VKAE..........Y..TFT..G.IE...R.M.QV.SQ.S.GEA.NG...YS..P.. | |
Retrocopy | QPVFGINYSK<RIVKAEKQEVAGKTSLYETTFTPRGTIELHNR<MIQVTSQSSKGEASNGPCRYSHMPRR |
Parental | AYVFPPPVANGMYPCPPGYPYPPPPPAEFYPGPPMMDGA-MGYVQPPPPPYPGPMEPPVSGPDVPSTPAA |
A.VFP.P..NGM..CP.....P...P..FYPGPPMM....M....P.PPPY.G...PP...PD.PSTPAA | |
Retrocopy | AFVFPLPSTNGMHACPSVWVLPSTAPSDFYPGPPMMN*T<ME*LEPWPPPYSGLPKPPATSPDIPSTPAA |
Parental | E |
E | |
Retrocopy | E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .13 RPM | 131 .25 RPM |
SRP017611_brain | 0 .00 RPM | 138 .78 RPM |
SRP017611_kidney | 0 .07 RPM | 87 .57 RPM |
SRP017611_liver | 0 .00 RPM | 37 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004946 | 1 retrocopy |
retro_cfam_1038 ,
|
Callithrix jacchus | ENSCJAG00000037619 | 1 retrocopy | |
Homo sapiens | ENSG00000132471 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009241 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000070 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009381 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007725 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000013775 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001625 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006045 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008640 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009660 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021421 | 2 retrocopies |