RetrogeneDB ID: | retro_ptro_15 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 18:20722579..20723290(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000042188 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP2 | ||
Ensembl ID: | ENSPTRG00000009660 | ||
Aliases: | WBP2, CERS2, LASS2 | ||
Description: | WW domain binding protein 2 [Source:HGNC Symbol;Acc:12738] |
Percent Identity: | 75.48 % |
Parental protein coverage: | 70.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLSKGKDAMQSFMMPFYLMKDCEIKQPVFGAN |
I.MSYDHV.LTF.DMKNVPEA.KGTKKGTVYLTP...IFLS..KDAMQSF.M.FYL.K.CEIKQPVF..N | |
Retrocopy | IPMSYDHVKLTFSDMKNVPEASKGTKKGTVYLTPF--IFLSRAKDAMQSFVMSFYLLKACEIKQPVFDTN |
Parental | YIKGTVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVA |
.IKGTV.AEAGGGWEGSAS.K..FTAGGA.E.GQ..LQV.SQASRGE..SGAYG.S.MP....V.PPPV. | |
Retrocopy | CIKGTVNAEAGGGWEGSASGKSAFTAGGATESGQQVLQVTSQASRGEALSGAYGHSHMPGRTCVFPPPVT |
Parental | NGMYPCPPGYPYPPP |
.GMYPCPPG.P.PPP | |
Retrocopy | SGMYPCPPGCPSPPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 344 .42 RPM |
SRP007412_cerebellum | 4 .05 RPM | 377 .63 RPM |
SRP007412_heart | 0 .26 RPM | 110 .26 RPM |
SRP007412_kidney | 1 .10 RPM | 180 .19 RPM |
SRP007412_liver | 1 .41 RPM | 165 .70 RPM |
SRP007412_testis | 0 .42 RPM | 98 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1926 |
Gorilla gorilla | retro_ggor_1404 |
Pongo abelii | retro_pabe_75 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004946 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000037619 | 1 retrocopy | |
Felis catus | ENSFCAG00000005760 | 1 retrocopy | |
Homo sapiens | ENSG00000132471 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009241 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000070 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009381 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007725 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000013775 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001625 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006045 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008640 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009660 | 1 retrocopy |
retro_ptro_15 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000021421 | 2 retrocopies |