RetrogeneDB ID: | retro_itri_1585 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393558.1:433546..434448(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000022859 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP2 | ||
Ensembl ID: | ENSSTOG00000021421 | ||
Aliases: | None | ||
Description: | WW domain binding protein 2 [Source:HGNC Symbol;Acc:12738] |
Percent Identity: | 86.84 % |
Parental protein coverage: | 89.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLSKGKDAMQSF |
.ALNKNHSEGG.VIVNNT...L.SYDHVELTFNDMKNVPEAFKGTKKGTVYLTPY.VI.LSKGKDAMQSF | |
Retrocopy | LALNKNHSEGGRVIVNNTKRVLISYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYWVISLSKGKDAMQSF |
Parental | MMPFYLMKDCEIKQPVFGANYIKGMVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQASRGEAPN |
MMPFYLMK...IKQPVFGANYIKGMVKAEAGGGWEGSASYKLTFTA.GAIE.GQRMLQVASQASRGEAPN | |
Retrocopy | MMPFYLMKNYKIKQPVFGANYIKGMVKAEAGGGWEGSASYKLTFTAEGAIELGQRMLQVASQASRGEAPN |
Parental | GAYGYPYMPSGAYVFPPPVANGMYPCPPGYPYPPP-PPEFYPGAPVMDGAMGYVQPPPPPYPGPMEPPVS |
GAYGYP.MPSGAY.FP.PVANGMYPCPPGYPYP.P..PEFYPGA.VMDGAMGYVQPPPPP.PGPM.PPVS | |
Retrocopy | GAYGYPSMPSGAYFFPLPVANGMYPCPPGYPYPLP<APEFYPGATVMDGAMGYVQPPPPPCPGPMKPPVS |
Parental | GPDVPSTPAAEAKAAEA-AASAYY-NPTHTTSTCPRASLHHLPTTLQKIRRPSR-PRLLP-SPPHGPSLP |
GP.VPSTPAAEAKA.EA.A...Y....THTTSTCPRASLHHLPTTLQKIRRPSR.P...P.SPPHGPS.P | |
Retrocopy | GPNVPSTPAAEAKASEAVASAYYN>QATHTTSTCPRASLHHLPTTLQKIRRPSR>PAYFP>SPPHGPSVP |
Parental | LLVGLHLAGGGQGGPYSSPGLMIK |
LLVGLHL.GGGQGGPYSSPGL.IK | |
Retrocopy | LLVGLHLTGGGQGGPYSSPGLIIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004946 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000037619 | 1 retrocopy | |
Felis catus | ENSFCAG00000005760 | 1 retrocopy | |
Homo sapiens | ENSG00000132471 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009241 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000070 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009381 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007725 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000013775 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001625 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006045 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008640 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009660 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021421 | 2 retrocopies |
retro_itri_1585 , retro_itri_660,
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