RetrogeneDB ID: | retro_ggor_1404 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 18:22079526..22080295(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000028312 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP2 | ||
Ensembl ID: | ENSGGOG00000009241 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLSKGKDAMQSF |
M.LN..HSEG..VI.NNT.SI.MSYDHV.LTF.DMKNVPEA.KGTKK.T.YLT....IFLS..KDAMQSF | |
Retrocopy | MVLNESHSEGSRVIANNTDSIPMSYDHVKLTFSDMKNVPEASKGTKKDTIYLTSF--IFLSRAKDAMQSF |
Parental | MMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQASRGEVPS |
.M.FYL.K.CEIKQPVF..N.IKGTV.AEAGGGWEGSAS.K..FTAGGA.E.GQ..LQV.SQASRGE..S | |
Retrocopy | VMSFYLLKACEIKQPVFDTNCIKGTVNAEAGGGWEGSASGKSAFTAGGATESGQQVLQVTSQASRGEALS |
Parental | GAYGYSYMPSGAYVYPPPVANGMYPC-PPGYPYPPPPPEFYPGPPMMDGAMGYVQPPPPPYPGPMEPPVS |
GAYG.S.MP....V.PPPV..GMYPC.PPG...PPP.PEFYPGPP.MD.AMGYV.P.PPPYPGPMEPPVS | |
Retrocopy | GAYGHSHMPGRTCVFPPPVTSGMYPC>PPGCLSPPPSPEFYPGPPKMDRAMGYVKPLPPPYPGPMEPPVS |
Parental | GPDVPSTPAAEAKAAEAAASAYYNPGNPHNVYMPTSQPPPPPYYPPEDKKTQ |
.PDVP.TPAAEA.A..AAAS.YYNPG.PH.V.MP..QPPP...YP.EDKKTQ | |
Retrocopy | -PDVPCTPAAEARATKAAASTYYNPGKPHHVSMPMKQPPPS--YPREDKKTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 352 .56 RPM |
SRP007412_cerebellum | 0 .20 RPM | 259 .36 RPM |
SRP007412_heart | 0 .00 RPM | 77 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 85 .38 RPM |
SRP007412_liver | 0 .03 RPM | 60 .85 RPM |
SRP007412_testis | 0 .73 RPM | 141 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1926 |
Pan troglodytes | retro_ptro_15 |
Pongo abelii | retro_pabe_75 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004946 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000037619 | 1 retrocopy | |
Felis catus | ENSFCAG00000005760 | 1 retrocopy | |
Homo sapiens | ENSG00000132471 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009241 | 2 retrocopies |
retro_ggor_1404 , retro_ggor_698,
|
Macropus eugenii | ENSMEUG00000000070 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009381 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007725 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000013775 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001625 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006045 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008640 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009660 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021421 | 2 retrocopies |