RetrogeneDB ID: | retro_itri_660 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393309.1:741710..742355(-) | ||
Located in intron of: | ENSSTOG00000008074 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP2 | ||
Ensembl ID: | ENSSTOG00000021421 | ||
Aliases: | None | ||
Description: | WW domain binding protein 2 [Source:HGNC Symbol;Acc:12738] |
Percent Identity: | 66.96 % |
Parental protein coverage: | 65.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | NNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLSKGKDAMQSFMMPFYLMKDCEIKQP |
.NTESILMSY.HV.L..NDMKN..E.FK..KKGTVYLTPYRV.FLSKGK.AMQSFM.PFYLMKDCEIK.P | |
Retrocopy | SNTESILMSYEHVKLKLNDMKNMSEIFKENKKGTVYLTPYRVNFLSKGKEAMQSFMIPFYLMKDCEIK*P |
Parental | VFGANYIKGMVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQA-SRGEAPNGAYGY-PYMPSGA- |
V......KG..KA..GGGWEGSA...LTFT.GG.I.F.Q..LQ.A.QA..R.EA.NGAYGY.P.MPSGA. | |
Retrocopy | VL-VQTAKGTAKAKIGGGWEGSATDNLTFTTGGTIKFSQWILQMAFQA<PRSEALNGAYGY<PLMPSGA< |
Parental | YVFP-PPVANGMYPCPPGYP-YPPPPPEFYPGAPVMDGAMGYVQPPPPPYPGPMEP-PVSGPDVPSTPAA |
..FP.PPVANG.Y.C.P..P....PP..FY.G.P..DGAMGYV..P.PPYP.PM.P..VS.PDVPST.AA | |
Retrocopy | LFFP<PPVANGIYHCLPT*P<HTLPPSHFYSGHPLKDGAMGYVKLPLPPYPRPMKP<TVSSPDVPSTTAA |
Parental | EAKAAEAAASAYYN |
.AK..E.A.SAYYN | |
Retrocopy | MAKPIEVATSAYYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004946 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000037619 | 1 retrocopy | |
Felis catus | ENSFCAG00000005760 | 1 retrocopy | |
Homo sapiens | ENSG00000132471 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009241 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000070 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009381 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007725 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000013775 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001625 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006045 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008640 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009660 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021421 | 2 retrocopies |
retro_itri_1585, retro_itri_660 ,
|