RetrogeneDB ID: | retro_cfam_1777 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:6672035..6672358(+) | ||
Located in intron of: | ENSCAFG00000013010 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATPIF1 | ||
Ensembl ID: | ENSCAFG00000032458 | ||
Aliases: | None | ||
Description: | ATPase inhibitory factor 1 [Source:HGNC Symbol;Acc:871] |
Percent Identity: | 72.97 % |
Parental protein coverage: | 99.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAVSAVSSRVWLGMWGV-RAL-QTRGFGSER---SEDPGSAGSIREAGGAFGKREQAEEERYFRARTREQ |
MAV..VS...WLGMWG..RAL..T.GF.SER...SED...A..I.EAGGAFGK.EQAEEE.YFR..TREQ | |
Retrocopy | MAVMDVSTQMWLGMWGL<RAL<VT*GFASERSEDSEDASTASLIQEAGGAFGKKEQAEEE*YFRVHTREQ |
Parental | LAALKKHHEDEISHHIKEIERLQKEIERHKKKI-KNLKSDD |
LAALKKHHEDEI.HH.KEIE.LQKEIE.HKKKI.KNLK.DD | |
Retrocopy | LAALKKHHEDEITHHVKEIEHLQKEIEWHKKKI>KNLKHDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .34 RPM | 90 .76 RPM |
SRP017611_brain | 0 .16 RPM | 37 .24 RPM |
SRP017611_kidney | 0 .07 RPM | 172 .22 RPM |
SRP017611_liver | 0 .15 RPM | 30 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032458 | 2 retrocopies |
retro_cfam_1777 , retro_cfam_651,
|
Callithrix jacchus | ENSCJAG00000009581 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015460 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000170 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015536 | 1 retrocopy | |
Mus musculus | ENSMUSG00000054428 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010337 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000017615 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013300 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010860 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020766 | 1 retrocopy |