RetrogeneDB ID: | retro_sara_458 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_215238:5829..6098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATPIF1 | ||
Ensembl ID: | ENSSARG00000010860 | ||
Aliases: | None | ||
Description: | ATPase inhibitory factor 1 [Source:HGNC Symbol;Acc:871] |
Percent Identity: | 75.82 % |
Parental protein coverage: | 82.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAPALAAQVRLGVCGLRALQARG-IKSDQSGKFDSQSGSIREGGGAFARREKAEEERYFRQRSKEQLEA |
MAAPALA.QVRL..C.LRALQA....K..QSGK.D..SGSI.EGGG.FARREKAEEE.YF..RSKEQLEA | |
Retrocopy | MAAPALAGQVRLSACSLRALQAQD<LKFYQSGKCDAHSGSIQEGGGTFARREKAEEEHYFPARSKEQLEA |
Parental | LRQHHEDEIDIHKKEIERLQK |
L.QHHEDEI.IHKK.IE.LQK | |
Retrocopy | LKQHHEDEITIHKKDIEHLQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032458 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009581 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015460 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000170 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015536 | 1 retrocopy | |
Mus musculus | ENSMUSG00000054428 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010337 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000017615 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013300 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010860 | 1 retrocopy |
retro_sara_458 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000020766 | 1 retrocopy |