RetrogeneDB ID: retro_ogar_116

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873589.1:6497527..6497851(-)
• Located in intron of: ENSOGAG00000024418

Retrocopy information

• Ensembl ID: ENSOGAG00000024978
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010337
• Aliases: None
• Description: None

Sequence

>retro_ogar_116
ATGGCAGTCTCGGCGCAGGTGGTGCAGTTGCGCTTTGGCATGTGGGGCGTAAAGGCCGTCCTACAAGCCTGCGGCTTCGC
CTTGGATCAGCTCAGCAATGTCAACTTGAGCACGGGCTCAATCCGAGAAGCTGGTGGGGCCTTCGGAAAGAAAGAGCAGG
CGGAAGAGGAACCATATTTCCAGGGGCAGGCTAAAGAACAACTGGCCGCCTTGAAAAAACACCATGAAGATGAGATCGGT
CATCATAAGAGGGAGACTGAGTGTCTACAGAAAGAAATTGAGCGACATAGGCAGAAGATCAAAAAGCTAAACCATGATGA
TTAA

Alignment

ORF - retro_ogar_116 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.98 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAVSAQVVRSRFGMWGVKAV-QARGFASDQPSNVDRSAGSIREAGGAFGKKEQAEEERYFRAQAKEQLAA
          MAVSAQVV..RFGMWGVKAV.QA.GFA.DQ.SNV..S.GSIREAGGAFGKKEQAEEE.YF..QAKEQLAA
Retrocopy MAVSAQVVQLRFGMWGVKAVLQACGFALDQLSNVNLSTGSIREAGGAFGKKEQAEEEPYFQGQAKEQLAA

Parental  LKKHHEDEIGHHKREIERLQKEIERHKQKIKKLNHDD
          LKKHHEDEIGHHKRE.E.LQKEIERH.QKIKKLNHDD
Retrocopy LKKHHEDEIGHHKRETECLQKEIERHRQKIKKLNHDD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_116 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000032458	2 retrocopies	retro_cfam_1777, retro_cfam_651,
Callithrix jacchus	ENSCJAG00000009581	1 retrocopy	retro_cjac_1406,
Dasypus novemcinctus	ENSDNOG00000015460	1 retrocopy	retro_dnov_2592,
Myotis lucifugus	ENSMLUG00000000170	1 retrocopy	retro_mluc_363,
Monodelphis domestica	ENSMODG00000010826	1 retrocopy	retro_mdom_902,
Mustela putorius furo	ENSMPUG00000015536	1 retrocopy	retro_mputfur_1570,
Mus musculus	ENSMUSG00000054428	2 retrocopies	retro_mmus_2516, retro_mmus_908,
Otolemur garnettii	ENSOGAG00000010337	2 retrocopies	retro_ogar_116 , retro_ogar_268,
Pteropus vampyrus	ENSPVAG00000017615	1 retrocopy	retro_pvam_817,
Rattus norvegicus	ENSRNOG00000013300	1 retrocopy	retro_rnor_2655,
Sorex araneus	ENSSARG00000010860	1 retrocopy	retro_sara_458,
Ictidomys tridecemlineatus	ENSSTOG00000020766	1 retrocopy	retro_itri_1240,