RetrogeneDB ID: retro_mluc_363

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429800:7447275..7447593(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010811
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000170
• Aliases: None
• Description: None

Sequence

>retro_mluc_363
ATGGCAGTCTCCGAGTCGGCAGTGCGGCTGTGGCTCACAGTGTGCGGAGTGCGGGCCATGCAAGCCGGAGGCTTTGGCTG
CGAAAGGTCAGCTAATTTCAGCTTCGAGGCGGGTGCGAACAGGGAAGCCGGTGGGACCTTCACAAAAAAAGAGAAGGCTG
AAGAGGAACGATACTTCCGAGAGCGGACTAAAGAACAGCTGGCAGCCTTGAAGAAACAACATGAAGAAGAGATCACTCAT
CATAAAAAGGAGATTGAGCATCTGCAGAAAGAAATTGATCGGCACAAGCAGAACATCAAGAAACTGAAAGATCATGAT

Alignment

ORF - retro_mluc_363 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.19 %
• Parental protein coverage: 97.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAVPATAARLRLGAWGVRAMRAGGFGCGRSARFSTDSGAIKEAGGSFARREKAEEERYFLERTKEQLAAL
          MAV...A.RL.L...GVRAM.AGGFGC.RSA.FS...GA..EAGG.F...EKAEEERYF.ERTKEQLAAL
Retrocopy MAVSESAVRLWLTVCGVRAMQAGGFGCERSANFSFEAGANREAGGTFTKKEKAEEERYFRERTKEQLAAL

Parental  KKHHEEEINHHKKEIERLQKEIERHKQNIKKLKDH
          KK.HEEEI.HHKKEIE.LQKEI.RHKQNIKKLKDH
Retrocopy KKQHEEEITHHKKEIEHLQKEIDRHKQNIKKLKDH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_363 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000032458	2 retrocopies	retro_cfam_1777, retro_cfam_651,
Callithrix jacchus	ENSCJAG00000009581	1 retrocopy	retro_cjac_1406,
Dasypus novemcinctus	ENSDNOG00000015460	1 retrocopy	retro_dnov_2592,
Myotis lucifugus	ENSMLUG00000000170	1 retrocopy	retro_mluc_363 ,
Monodelphis domestica	ENSMODG00000010826	1 retrocopy	retro_mdom_902,
Mustela putorius furo	ENSMPUG00000015536	1 retrocopy	retro_mputfur_1570,
Mus musculus	ENSMUSG00000054428	2 retrocopies	retro_mmus_2516, retro_mmus_908,
Otolemur garnettii	ENSOGAG00000010337	2 retrocopies	retro_ogar_116, retro_ogar_268,
Pteropus vampyrus	ENSPVAG00000017615	1 retrocopy	retro_pvam_817,
Rattus norvegicus	ENSRNOG00000013300	1 retrocopy	retro_rnor_2655,
Sorex araneus	ENSSARG00000010860	1 retrocopy	retro_sara_458,
Ictidomys tridecemlineatus	ENSSTOG00000020766	1 retrocopy	retro_itri_1240,