RetrogeneDB ID: | retro_cfam_651 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 15:10403267..10403568(+) | ||
Located in intron of: | ENSCAFG00000003903 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATPIF1 | ||
Ensembl ID: | ENSCAFG00000032458 | ||
Aliases: | None | ||
Description: | ATPase inhibitory factor 1 [Source:HGNC Symbol;Acc:871] |
Percent Identity: | 91.09 % |
Parental protein coverage: | 94.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SSRVWLGMWG-VRALQTRGFGSERSEDPGSAGSIREAGGAFGKREQAEEERYFRARTREQLAALKKHHED |
..RVWLGMWG.VRALQTRGFGSE.SEDPGS.GSIREAGGAFGK.EQAEEERYFRARTREQLAALKKHHED | |
Retrocopy | AQRVWLGMWG>VRALQTRGFGSEWSEDPGSTGSIREAGGAFGKKEQAEEERYFRARTREQLAALKKHHED |
Parental | EISHHIKEIERLQKEIERHKKKIKNLKSDDD |
.ISHHIKEIERLQKEI.RHKKKIKNLK.DDD | |
Retrocopy | VISHHIKEIERLQKEIKRHKKKIKNLKPDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 90 .76 RPM |
SRP017611_brain | 0 .00 RPM | 37 .24 RPM |
SRP017611_kidney | 0 .07 RPM | 172 .22 RPM |
SRP017611_liver | 0 .00 RPM | 30 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032458 | 2 retrocopies |
retro_cfam_1777, retro_cfam_651 ,
|
Callithrix jacchus | ENSCJAG00000009581 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015460 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000170 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015536 | 1 retrocopy | |
Mus musculus | ENSMUSG00000054428 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010337 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000017615 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013300 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010860 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020766 | 1 retrocopy |