RetrogeneDB ID: | retro_cfam_1966 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:59904107..59904498(-) | ||
Located in intron of: | ENSCAFG00000017458 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCAFG00000018174 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S15a (RPS15A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252147] |
Percent Identity: | 93.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN |
MVRMNVL.DALKSINNAEKRGKR.VLIRPCSKVIVRFLTV.MKHGYIGEFEIIDDHRAGKIVVNLTGRLN | |
Retrocopy | MVRMNVLTDALKSINNAEKRGKR*VLIRPCSKVIVRFLTVIMKHGYIGEFEIIDDHRAGKIVVNLTGRLN |
Parental | KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTG-GKILGFFF |
KCGVISPRFDVQLKDLEKWQNNLLPS.QF.FIVLTT.AGIMDH.E.RRKHTG.GKILGFFF | |
Retrocopy | KCGVISPRFDVQLKDLEKWQNNLLPSHQFDFIVLTTLAGIMDHKETRRKHTG>GKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 130 .57 RPM |
SRP017611_brain | 0 .00 RPM | 58 .19 RPM |
SRP017611_kidney | 0 .07 RPM | 455 .13 RPM |
SRP017611_liver | 0 .00 RPM | 125 .88 RPM |