RetrogeneDB ID: | retro_mdom_794 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:530288152..530288480(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000005944 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.45 % |
Parental protein coverage: | 53.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LRWERAWFPPAVVGVVSLVFLLIYYLDPSVLSGVSCFVMFLCLADYLVPILA-PRIFGSNKWTTEQQQRF |
L..ERAWFPP..VGVVSLVFL.I...DPSVLSGVS.FV.F..LADYL.PIL...RIFGS.KWT.EQ.QRF | |
Retrocopy | LSMERAWFPPVIVGVVSLVFL*IDNFDPSVLSGVSRFVTFSSLADYLAPILT>SRIFGSTKWTSEQLQRF |
Parental | HEICSNLVKTRRRTVGWWRRLFTLKEEKPKMYFMTMIISL |
H.I..NLV.T...TVGWWR..FT.K.EK.......MII.L | |
Retrocopy | HDISRNLVTTQC*TVGWWRCFFTHKDEKAQVCLRAMIIFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |