RetrogeneDB ID: | retro_eeur_186 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_196684:415..829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL6IP1 | ||
Ensembl ID: | ENSEEUG00000005434 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 6 interacting protein 1 [Source:HGNC Symbol;Acc:697] |
Percent Identity: | 90.58 % |
Parental protein coverage: | 67.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SVLSGVSCFVMVLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRTMGWWKRLFTLKEEKP |
SV.....CFVM.LCLADYLVPILAPRIF.SNKWTTEQQQRFHEICSNLVKTR..TMGWWK.LFTLKEEKP | |
Retrocopy | SVWCFLFCFVMFLCLADYLVPILAPRIFSSNKWTTEQQQRFHEICSNLVKTRCKTMGWWKHLFTLKEEKP |
Parental | KMYFMSMIISLAAVAWVGQQVHNLLLTYLIVTFFLLLPGLNQHGVISKYIAMAKREINKLLKQKEKKN |
KMYFM.MIISLAAVAWVGQQVHNLLLTYLIVTFFLLLP.LNQH.VISKYIAMAKREINKLLKQKEKKN | |
Retrocopy | KMYFMGMIISLAAVAWVGQQVHNLLLTYLIVTFFLLLPRLNQHRVISKYIAMAKREINKLLKQKEKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .09 RPM | 44 .64 RPM |
SRP017611_kidney | 5 .44 RPM | 116 .46 RPM |
SRP017611_liver | 4 .18 RPM | 66 .56 RPM |