RetrogeneDB ID:

retro_cfam_2186

Retrocopy
location
Organism:Dog (Canis familiaris)
Coordinates:X:77490550..77490991(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2V1
Ensembl ID:ENSCAFG00000032244
Aliases:None
Description:Canis lupus familiaris ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205096]


Retrocopy-Parental alignment summary:






>retro_cfam_2186
ATGGCAGCCACCACGGGCTCGGGAGTACAAGTTCCTCGCAATTTTTGACTGTTAGAAGAACTGGAAGAAGGCCAGAAAGG
AGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGATGACGATATGACACTTACAAGATGGACAGGGATGATAATTG
GGCTTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACCTAAATATCCAGAAGCACCCCCC
TTTGTAAGATTTGTGACAAAAATTAATATGAATGGAGTTAATAGTTCTAATAGAATGGTGGACCCAAGAGTCATATCCGT
GCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGCTCCGGCGCCTAATGATGTCTAAAGAAAACA
TGAAACTCCCTCAGCCATCCGAAGGACAGTATTACAGCAAT

ORF - retro_cfam_2186 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE
MAATTGSGV.VPRNF.LLEELEEGQKGVGDGTVSWGLEDD.DMTLTRWTGMIIG.PRTIYEN.IYSLKIE
RetrocopyMAATTGSGVQVPRNF*LLEELEEGQKGVGDGTVSWGLEDDDDMTLTRWTGMIIGLPRTIYENQIYSLKIE
ParentalCGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPP
CGPKYPEAPPFVRFVTKINMNGVNSSN..VDPR.ISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQP.
RetrocopyCGPKYPEAPPFVRFVTKINMNGVNSSNRMVDPRVISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPS
ParentalEGQCYSN
EGQ.YSN
RetrocopyEGQYYSN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012049_cerebellum 0 .00 RPM 68 .00 RPM
SRP017611_brain 0 .00 RPM 58 .12 RPM
SRP017611_kidney 0 .00 RPM 52 .50 RPM
SRP017611_liver 0 .00 RPM 14 .00 RPM
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_2186 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_2186 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_cfam_2186 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 9 parental genes, and 63 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000288271 retrocopy
Canis familiaris ENSCAFG00000032244 8 retrocopies
Homo sapiens ENSG000002446874 retrocopies
Macaca mulatta ENSMMUG000000122286 retrocopies
Oryctolagus cuniculus ENSOCUG000000261724 retrocopies
Otolemur garnettii ENSOGAG0000002589412 retrocopies
Pan troglodytes ENSPTRG000000136151 retrocopy
Rattus norvegicus ENSRNOG0000002558021 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000143226 retrocopies



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