Parental gene: | UBE2V1, ENSCAFG00000032244 |
| Aliases: | None |
| Description: | Canis lupus familiaris ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205096] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 24:36570171..36601200(-) |
>ENSCAFG00000032244
TTGGTGGTTTTCATCTGTTCTGGACCCAAACTGATCAACATTTTGACATTTATTTTAGGAGTAAAAGTCCCTCGCAATTT
TCGACTGTTGGAAGAACTGGAAGAAGGCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAG
ACATGACACTTACAAGATGGACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAA
ATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTTAATAG
TTCTAATGGAGTGGTGGACCCAAGAGCCATATCCGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGC
AAGAGCTCCGGCGCCTAATGATGTCTAAAGAAAACATGAAACTCCCTCAGCCACCCGAAGGACAGTGTTACAGCAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 68 .00 RPM |
| SRP017611_brain | 58 .12 RPM |
| SRP017611_kidney | 52 .50 RPM |
| SRP017611_liver | 14 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000028827 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000244687 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000012228 | possible_ortholog | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000026172 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000025894 | ortholog_one2one | 12 retrogenes | |
| Pan troglodytes | ENSPTRG00000013615 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000025580 | possible_ortholog | 21 retrogenes |
retro_rnor_1014, retro_rnor_1032, retro_rnor_1291, retro_rnor_1609, retro_rnor_1649, retro_rnor_1650, retro_rnor_1651, retro_rnor_2055, retro_rnor_2282, retro_rnor_2406, retro_rnor_2407, retro_rnor_2412, retro_rnor_2488, retro_rnor_2489, retro_rnor_2490, retro_rnor_2534, retro_rnor_2535, retro_rnor_2905, retro_rnor_819, retro_rnor_881, retro_rnor_991,
|
| Ictidomys tridecemlineatus | ENSSTOG00000014322 | possible_ortholog | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_494 | 93.20 | 100.00 | Please wait, loading  |
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| 2. | retro_cfam_604 | 76.00 | 100.00 | Please wait, loading |
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| 3. | retro_cfam_1005 | 100.00 | 82.99 | Please wait, loading |
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| 4. | retro_cfam_1066 | 92.23 | 69.39 | Please wait, loading |
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| 5. | retro_cfam_1299 | 87.92 | 100.00 | Please wait, loading |
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| 6. | retro_cfam_1340 | 90.54 | 100.00 | Please wait, loading |
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| 7. | retro_cfam_1499 | 84.56 | 100.00 | Please wait, loading |
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| 8. | retro_cfam_2186 | 93.20 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000032244 retrocopies