RetrogeneDB ID:

retro_ogar_2790

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873664.1:4944207..4944454(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PTS
Ensembl ID:ENSOGAG00000017191
Aliases:None
Description:6-pyruvoyltetrahydropterin synthase [Source:HGNC Symbol;Acc:9689]


Retrocopy-Parental alignment summary:






>retro_ogar_2790
AAGATTGATCCTGTTACAAGAATGGTTATAAATTTGACCAACCTCAAAAAATAATATAGAGGAGGCAATTATGAAACCTC
TTGATCATAAGAATCTGAATTTGGATGTGCCATGCTTTGCAGATGTAAGCACAACTGAACATGTAGCTGTATCTATCTGG
GAGAACCTCAAGAAAGTACTTCCTATGGGAGAGCTTTATAAAGTAAAAGTGTCTGAAACTGACAATATAGTCGTCTACAA
GGGAGAC

ORF - retro_ogar_2790 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.65 %
Parental protein coverage: 57.93 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEIDPVTGMVMNLTDLKK-YMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVCIWENLQKVIPVGVLYKV
.IDPVT.MV.NLT.LKK...EEAIMKPLDHKNL.LDVP.FADV.STTE.VAV.IWENL.KV.P.G.LYKV
RetrocopyKIDPVTRMVINLTNLKK>NIEEAIMKPLDHKNLNLDVPCFADV-STTEHVAVSIWENLKKVLPMGELYKV
ParentalKVYETDNNIVVYKGE
KV.ETD.NIVVYKG.
RetrocopyKVSETD-NIVVYKGD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2790 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000000132 retrocopies
Callithrix jacchus ENSCJAG000000124372 retrocopies
Dasypus novemcinctus ENSDNOG000000148231 retrocopy
Echinops telfairi ENSETEG000000081452 retrocopies
Homo sapiens ENSG000001507871 retrocopy
Macaca mulatta ENSMMUG000000152551 retrocopy
Nomascus leucogenys ENSNLEG000000072991 retrocopy
Otolemur garnettii ENSOGAG00000017191 3 retrocopies
retro_ogar_1718, retro_ogar_2790 , retro_ogar_609,
Pongo abelii ENSPPYG000000038801 retrocopy
Pan troglodytes ENSPTRG000000042883 retrocopies



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