RetrogeneDB ID: | retro_hsap_3408 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:178954222..178954466(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253520 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTS | ||
Ensembl ID: | ENSG00000150787 | ||
Aliases: | PTS, PTPS | ||
Description: | 6-pyruvoyltetrahydropterin synthase [Source:HGNC Symbol;Acc:9689] |
Percent Identity: | 55.81 % |
Parental protein coverage: | 57.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIW-DNLQKVLPV-GVLYK |
.IDP.TGMV.NL..L..Y..EAI..PLD...LD.D..Y.......TENVAV......L.K.LPV.GVLYK | |
Retrocopy | KIDPVTGMVSNLTNLMAYIGEAIVKPLD--SLDLDMLYCDNGLCVTENVAVSTG<ERLGKFLPV<GVLYK |
Parental | VKVYETDNNIVVYKGE |
.KV.ET..NIVVYKG. | |
Retrocopy | AKVHETVSNIVVYKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .97 RPM | 4 .53 RPM |
bodymap2_adrenal | 3 .05 RPM | 12 .32 RPM |
bodymap2_brain | 0 .07 RPM | 21 .78 RPM |
bodymap2_breast | 1 .17 RPM | 10 .31 RPM |
bodymap2_colon | 1 .06 RPM | 14 .73 RPM |
bodymap2_heart | 0 .48 RPM | 11 .45 RPM |
bodymap2_kidney | 0 .93 RPM | 26 .37 RPM |
bodymap2_liver | 0 .15 RPM | 30 .23 RPM |
bodymap2_lung | 0 .26 RPM | 9 .85 RPM |
bodymap2_lymph_node | 2 .69 RPM | 11 .27 RPM |
bodymap2_ovary | 0 .60 RPM | 12 .65 RPM |
bodymap2_prostate | 1 .35 RPM | 17 .06 RPM |
bodymap2_skeletal_muscle | 0 .09 RPM | 13 .00 RPM |
bodymap2_testis | 0 .25 RPM | 16 .57 RPM |
bodymap2_thyroid | 0 .38 RPM | 16 .25 RPM |
bodymap2_white_blood_cells | 0 .57 RPM | 2 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000013 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000012437 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014823 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008145 | 2 retrocopies | |
Homo sapiens | ENSG00000150787 | 1 retrocopy |
retro_hsap_3408 ,
|
Macaca mulatta | ENSMMUG00000015255 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007299 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000017191 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000003880 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004288 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .19 RPM |
CEU_NA11843 | 0 .28 RPM |
CEU_NA11930 | 1 .99 RPM |
CEU_NA12004 | 0 .46 RPM |
CEU_NA12400 | 0 .21 RPM |
CEU_NA12751 | 0 .73 RPM |
CEU_NA12760 | 0 .72 RPM |
CEU_NA12827 | 0 .85 RPM |
CEU_NA12872 | 0 .11 RPM |
CEU_NA12873 | 0 .73 RPM |
FIN_HG00183 | 0 .38 RPM |
FIN_HG00277 | 0 .52 RPM |
FIN_HG00315 | 0 .77 RPM |
FIN_HG00321 | 0 .33 RPM |
FIN_HG00328 | 0 .62 RPM |
FIN_HG00338 | 0 .98 RPM |
FIN_HG00349 | 0 .34 RPM |
FIN_HG00375 | 0 .83 RPM |
FIN_HG00377 | 1 .01 RPM |
FIN_HG00378 | 0 .85 RPM |
GBR_HG00099 | 1 .25 RPM |
GBR_HG00111 | 0 .80 RPM |
GBR_HG00114 | 1 .05 RPM |
GBR_HG00119 | 0 .69 RPM |
GBR_HG00131 | 0 .52 RPM |
GBR_HG00133 | 0 .77 RPM |
GBR_HG00134 | 0 .83 RPM |
GBR_HG00137 | 1 .46 RPM |
GBR_HG00142 | 0 .72 RPM |
GBR_HG00143 | 0 .48 RPM |
TSI_NA20512 | 0 .65 RPM |
TSI_NA20513 | 1 .04 RPM |
TSI_NA20518 | 0 .39 RPM |
TSI_NA20532 | 0 .68 RPM |
TSI_NA20538 | 1 .80 RPM |
TSI_NA20756 | 0 .38 RPM |
TSI_NA20765 | 1 .26 RPM |
TSI_NA20771 | 0 .85 RPM |
TSI_NA20786 | 0 .60 RPM |
TSI_NA20798 | 0 .65 RPM |
YRI_NA18870 | 1 .02 RPM |
YRI_NA18907 | 1 .39 RPM |
YRI_NA18916 | 1 .37 RPM |
YRI_NA19093 | 0 .52 RPM |
YRI_NA19099 | 0 .24 RPM |
YRI_NA19114 | 0 .60 RPM |
YRI_NA19118 | 0 .37 RPM |
YRI_NA19213 | 0 .53 RPM |
YRI_NA19214 | 0 .37 RPM |
YRI_NA19223 | 0 .86 RPM |